Polyodon spathula (Mississippi paddlefish): 121294781
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Entry
121294781 CDS
T07273
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121294781
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
121294781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_10
TPR_17
TPR_7
TPR_11
TPR_6
TPR_Slam
ARM_TT21_5th
ARM_TT21_4th
ANAPC3
ARM_TT21_C
NatA_aux_su
TPR_EMC2
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
121294781
NCBI-ProteinID:
XP_041074794
LinkDB
All DBs
Position
19:complement(6142001..6152994)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMAHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVSEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMNEFHEAEKLYKNVLREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYYREARDVFAQVREATAEISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVL
LYLSRALFKCGKLQECKHTLLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
CAVKELELAHRYFSYLSKAGDKMRFDLVLASTEARQCSDLLSQAQYHVARARKQDEEEKE
LRSKQEQERELLRAQQFKQMEDKRNKEVEEQKKLLEQRAQYVEKTRNLLSFANGGKEIKE
KKRGGGGGRRSKKTSEFDEFVNDDSDEDLPSKKKKRRKGGSGSDQEEADDGEKKPRKKRR
PQKDEDGSDDEEGSSRPKKQRKPRERKRIEKPDRMPPSLKGKIKSKAIISSSESSDEDGL
KIAEDRNPRDSGSEDDDDNEQSHRKRIVSESESDEERKKSDSEAAGSPQRSGSQRSDDDS
GSDQPVRKRKQQSDSDQSDNDSVRSKKSRSGGSDDESRPASPAADSDRGSDNEGSARVSG
NESEPERSNNEASDRGSDDSD
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggctccattgaaatcccccttcgggatactgacgaggtcattgagcttgac
ttcgatcagttaccagaaggagatgaagtcatcagtatcctcaagcaggaacacacccag
ctgcacatatggattgctctggcactggaatattacaaacaaggcaagacggaggacttt
gtcaaattgctcgaagcagccagaatagatgggaacttggactatagagaccatgagaaa
gatcagatgacgtgcctggacaccctggcagcttactatgtacagcaggccaggaaagag
aagaataaagatgccaagaaagagctcattacccaggccaccttgctgtacacaatggca
gacaaaattatcatgtatgaccagaaccacttgttggggcgagcctgtttctgtctgctg
gagggagataaaatggaccaggcagatgcccagttccatttcgttcttaaccagtcaaca
aataacatcccagcccttctaggtaaggcatgcatctctttcaacaagaaagactacaga
ggtgctttggcgtactataagaaggcactacgtaccaatcctggttgcccagctgaggtg
cggttaggtatggcccactgcttcgtgaagctcagcaaactggagaaagctcgcctggca
ttcggcagagctctggagctcaattcaaagtgtgtgggtgctttagttggattagctgtt
ctggaactaaacagcaaagaagcagattctatcaaaaatggtgtccagcttctctcaaga
gcctacaccattgaccccagtaatcccatggttttgaatcatttggctaaccatttcttc
tttaaaaaggattacagtaaagtgcagcacttggctcttcatgcctttcataacacagag
gtggaagctatgcaggcagaaagttgctaccagcttgcaagatctttccatgtgcaggaa
gactatgatcaggcttttcagtattattaccaggcaactcagtttgcctcctccacattt
gtgctgcccttctttggcctgggacagatgtatgtgtatagacgggacaaggagaatgca
gcgcagtgctttgaaaaggttttgaaagcttatcccaataactatgagaccatgaagatt
cttggttcgctgtatgctgcctctgaggatcaggaaaagagagatattgcaaagggccat
ctgaagaaagtatctgagcagtacccggatgatgtggaggcttggattgagctggcacaa
atccttgagcagacggatattcagggtgccctctccgcctacggaacagccacccggatc
ctgcaggagaaggtgcaggcagacgtacctcctgagatcctgaacaatctgggggctctg
cacttcagacttggaaacttgggggaagcgaagaaatactttttggcttctctggaacgt
gccaaagcagaaggagagcatgatgagcattactacaatgcaatctccgtaaccacttcc
tataatctggccagactttatgaggccatgaatgaattccatgaagcagaaaaactttac
aagaatgtcttaagggagcatcccaattatgtggattgctatctacgactgggggcgatg
gccagagacaaggggaacttttatgaagcttccgactggttcaaagaggctctacagatt
aaccaggaccatccagatgcttggtctctaataggaaatcttcacttggccaaacaagag
tggggtccgggtcagaagaagtttgagaggatccttaaacaaccttctactcagaatgac
acatactccatgttggctttgggcaatgtatggcttcagaccctccaccagccaaccaga
gaccgggaaaaggaaaagcggcatcaggatcgtgctttggccatctataaacaagtgctg
cgaaatgactccaagaacttgtatgctgctaatggcataggtgctgtccttgcacataag
ggatattatcgcgaggcccgggatgtttttgcccaagttagggaagctacagcagagatc
agcgatgtctggctgaacctggcacacatctatgtggagcagaagcagtacatcagtgca
gtacagatgtatgaaaactgcctgaaaaagttctacaaacatcagaacacggaggtgctg
ctttacttgtctcgggccttattcaaatgtggcaaactacaggagtgcaagcataccctg
ctcaaggcccggcatgttgcccccaacgacactgtactgatgtttaacgtggctttagta
ctacagagactggctacgctcgtgctgaaagacgagaagagtaatctaaaggctgtactc
tgtgccgtcaaagagcttgaactagcccacaggtactttagttacctcagcaaagctgga
gacaagatgcgatttgacttggtgcttgcgtcaactgaagccaggcagtgctcggatttg
ctcagccaggcgcagtaccatgtggctcgtgcccgcaagcaggatgaagaggagaaggag
cttcggtctaaacaggaacaggaaagggagcttctccgggcacaacagttcaaacagatg
gaagataagcgtaataaagaggttgaagagcagaagaagttgctagagcagagagcacag
tatgtggagaagaccaggaacctcctgtcatttgcaaacggaggcaaggaaatcaaagag
aagaagagaggaggtggaggcggcaggcgttccaagaaaacgtctgaatttgatgagttt
gttaatgatgactctgatgaggatttgccttcgaagaagaaaaagaggaggaagggaggc
agtggaagtgatcaagaggaggctgatgatggagagaagaaaccaaggaagaagagaaga
ccacaaaaggatgaggatggaagtgatgatgaggaaggttcctcaagacctaagaaacaa
cgcaaacctagagaacgcaagaggattgagaagcctgatcgtatgccgccttcattgaaa
gggaagatcaagtcgaaggcaatcatttcctcttcagagtcttcagatgaggatggactt
aaaattgctgaggaccgaaatccaagagacagcggatctgaggatgacgatgacaatgaa
cagtcgcacaggaagcgcatcgtgtcagagagcgagtctgatgaagagaggaagaagtct
gacagtgaggcagcaggaagccctcaaaggtctggtagccagagatccgatgacgattct
ggcagcgatcagccggttaggaagaggaaacagcagtcagactcggaccagtccgataac
gattctgttcgatccaaaaaaagccgctctgggggttcggatgatgagtcccgcccagct
tctcctgctgcagattcagacaggggctctgataatgaaggctcagcacgggtgtccgga
aatgaatccgagccagagaggtccaataacgaggcttcagatcgtggctctgatgacagt
gactaa
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