Polyodon spathula (Mississippi paddlefish): 121294826
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Entry
121294826 CDS
T07273
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121294826
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121294826
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121294826
Nuclear receptors [BR:
pspa03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121294826
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
BORCS6
Motif
Other DBs
NCBI-GeneID:
121294826
NCBI-ProteinID:
XP_041074869
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All DBs
Position
19:25779951..26023279
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AA seq
519 aa
AA seq
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MESTPDPTSDPGNNASEPATPLRDTPVNLETLRKAEHPVPVRRQSCSSTNRGITGTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNR
CQHCRLQKCLTVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTP
TYNLSTNGLTELHDDLSSYIDGHTPDGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTAGSGFFPYCSFTNGDISPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQTFL
QEEMENYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
LVRMCRAFDSQNNTVYFDGKYAGPLVFKALGCDDLISSVFEFGKNLCSLHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFSSEFEQPMPIDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtctactccagatccaacaagcgatccaggcaacaacgcctcagagccggctacc
ccgctcagggacaccccggtaaacctggagactctccgaaaagctgaacatccagtcccc
gttcgaaggcagagctgctcgagtaccaacagaggtattacgggaacaaagaagacacac
acttctcaaatcgaaattattccgtgcaagatctgtggagataaatcatcaggaattcat
tatggggttataacttgtgaaggctgcaagggcttcttcaggcgaagtcagcagagcaac
gccacatactcctgtcctcgtcagaagaactgtctgatcgaccgaaccagccgcaaccgt
tgccagcactgccggctgcagaagtgtctcactgtcggaatgtcacgagatgccgtcaag
tttggcagaatgtctaagaaacaacgagacagcttgtatgcggaagtgcagaaacaccga
atgcaacaacagcagcgggatcaccaacagcagcccggagaggctgagccactcacacct
acctacaacctctccaccaatgggctgacagagctgcacgatgacctcagcagctacatc
gacggccacacccccgatggcagcaaagcggactctgcagtcagcagcttctacctggat
atccagccttcacctgaccagtctgggctggatatcaacgggatcaaaccagaacccatc
tgtgacttcaccgctggttctggtttctttccgtactgctcgttcacaaatggggacatc
tctcccacagtgtcaatggcagagctagaacatttggcacagaatatctccaagtcacac
atggaaacatgtcagtacttgagagaggaactacagcaaatgacctggcagacattcctg
caggaagaaatggagaactaccagaacaagccccgggaggtcatgtggcagctgtgtgca
atcaaaatcacagaagctatccagtatgtggtggagtttgccaaacgcattgatggcttc
atggagctgtgtcagaatgatcaaatagtgcttcttaaagcgggttcgttggaggttgtg
ctggtcagaatgtgccgtgcctttgactctcagaacaacacagtgtattttgatggaaag
tatgctggtccattagttttcaaagcattaggctgtgatgacttgatcagctccgtcttt
gagtttggaaaaaacttgtgttctttgcacctgtctgaagacgagattgcattattctct
gcgtttgtgttgatgtctgcagatcgatcctggcttcaagaaaaggtaaaggtggagaag
cttcagcagaaaatccagctggctcttcagcacgtcctgcagaagaaccacagagaggat
ggcatactgacaaagttgatatgcaaagtgtcaacactgcgagcactgtgcagcagacat
acagagaagctgactgcattcaaagcaatatacccggacattgtgcgtgcccacttccct
ccgttatacaaggagctcttcagttcagagttcgagcagccaatgcccattgatgggtaa
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