Polyodon spathula (Mississippi paddlefish): 121294858
Help
Entry
121294858 CDS
T07273
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121294858
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121294858
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
NGL family
121294858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_14
V-set
Ig_2
LRR_9
LRRNT
Ig_6
Sp38
DUF7617
Podoplanin
DUF6821
Herpes_gE_N
Syndecan
RIFIN
Motif
Other DBs
NCBI-GeneID:
121294858
NCBI-ProteinID:
XP_041074935
LinkDB
All DBs
Position
19:13902940..14531543
Genome browser
AA seq
636 aa
AA seq
DB search
MLNKMTSHPQQTMRGPRWNRALSDPLLVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRGLREVPDGISTNTRYLNLQENQIQIIKVDSFKHLRHLEILQLSKNHIRNIEIGAF
NGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLGMCNLREIPNLTPLVKLDELELSGNQLSVIRPGSFQ
GLTHLQKLWMMHAQIQAIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLHH
NPWNCNCDILWLSWWLKEMVPANTSCCARCHSPSSLKGRYIGELDQNYFTCYAPVIVEPP
ADLNVTEGMAAELKCRASTALTSVSWITPNGTIMTHGAYKVRISVLNDGTLNFTNVTAQD
TGTYTCMVSNSAGNTTASATLNVSATENSTFSYFTTVTVETIEPSQDEGRTTEQNTSPTP
SSSWEATYTTTPLTPRSTKSTEKTYTIPVTEGSLNGLDEVMKTTKIIIGCFVAITLMAAV
MLIIFYKMRKQHHRQNHHAPTRTIEIINVDEEITGGPPLESHLTLPPLEHEHLNHYNSYK
TPYNHTGNTISSIHSSAHEPLLMRATSKDNVQETQI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacatcgcacccacagcagacaatgagaggtcctaggtggaacagg
gccttgtccgaccccttgcttgtgctgctgttggctcttcagctgctggtagtggctggc
ctggtgagagcccagacctgcccttcagtgtgttcctgtagcaaccagttcagcaaagtg
atttgcacccgacgaggactcagggaagtgcccgatggcatctccaccaacacccgctac
ctgaatctgcaagagaaccagatccagataatcaaagtggacagcttcaagcacctgcgc
cacctggagatcctacagctcagcaagaaccacatccgcaacattgagattggggccttt
aatgggctggccagtctcaacaccttggagctctttgataatagattgaccacgatcccc
aatggggctttcgaatacctctccaagctgaaggagctgtggttgaggaacaaccccatt
gagagcatcccctcttatgcttttaatcgggtgccctccttacggagacttgacttggga
gagctcaaacgcctctcctatatctccgaaggggcttttgagggcctttcgaacctcagg
tacctaaacctgggaatgtgcaaccttagagagatccccaacctcacgcctcttgtcaaa
ctggatgagctggagctttcaggcaaccagctttccgtcatccgaccaggatccttccag
gggctgactcacctgcagaagctgtggatgatgcatgcccagattcaggccattgagagg
aactcttttgatgacttgcagtccttggtggagttgaacctagcccacaacaacttgacc
ttgctcccccatgacctctttacacccctccaccatctcgaaagggtccacctacatcac
aatccttggaactgcaactgcgacatcctctggctcagctggtggctcaaggagatggtg
cctgccaacactagctgctgtgcccgctgccactcgccctccagcctcaaggggcgctat
attggggagctggaccagaattacttcacttgctatgctcctgttattgtagagccccct
gctgatcttaatgtgactgagggcatggctgcagagctaaaatgccgggcatccactgcc
ttgacttcagtcagttggatcacgcccaatggaaccataatgactcatggggcttacaag
gttcggatctcagtcctcaatgatggtacattaaactttaccaatgttactgcacaggat
acaggaacttatacatgtatggtgagcaattcagccggaaataccacagcctctgccacg
cttaacgtttctgcaaccgagaacagcacttttagctacttcacaactgttacggtggaa
accattgagccctctcaagatgagggtaggaccacagagcaaaatacgagtcccacgccc
tctagtagctgggaggccacctacaccacaaccccccttaccccccggagcaccaagtct
acagagaagacttataccatccctgtgacagaaggaagcctaaatggactggatgaagtg
atgaagaccactaagattatcattggctgctttgtggccattacacttatggctgctgtc
atgcttatcatcttctacaaaatgcgcaagcagcaccacaggcagaaccaccatgccccc
acaaggacaattgagattatcaacgtggacgaagaaatcacaggaggtccacctctggaa
agccacctgaccttacccccactggagcacgaacatctcaaccactacaactcctataag
actccatataaccacacaggcaacacaatcagttccatacacagctcggcgcatgaacct
ttgttaatgcgggcaacctcaaaagacaatgtacaagagacccaaatttaa
DBGET
integrated database retrieval system
