Polyodon spathula (Mississippi paddlefish): 121294859
Help
Entry
121294859 CDS
T07273
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121294859
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121294859
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121294859
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121294859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
121294859
NCBI-ProteinID:
XP_041074940
LinkDB
All DBs
Position
2:28160651..28209071
Genome browser
AA seq
2263 aa
AA seq
DB search
MSAFTQLGLLLWKNFVYRRRQTLQLLIEIAWPLFLFFILISVRMSYPPYEQHECHFPNKA
LPSAGTLPWVQGIICNANNPCFRYPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDK
SLGGFRSLIKALKHMQNTSSGFKLKDFLIENETLSTFLRENASFPEFAVKEILDADVNLE
KVLTRGFGVRLKDLCNVTKLEDFVTISDSRVSSVSEHIICTSSKEWLNRAERLFLSNLDF
VKPIRKKVKSDPHSIQLVSEATENLLQSLGSLVVELSSMKSWNDMRNEILFLTENASGSP
SQMYQAVSRIVCGHPEGGGLKIKSMNWYEDNNYKALFGGNSTEDETSFYDNSTTPYCNNM
MNNLESSPISRMIWRALKPLLIGKILYTPDTPATQRIIHEVNKTFQELGVFRDLGGMWDE
IKPKIWKFMESSQEIDLVRTLLQNNASSSFLDAQLNGTGWSVKAISRFLSTHSEDSQKTR
GSVYTWRDVFNETDHAILTISRFMECVNLDKLEPAPTEERLINTSMKLLDERRFWAGIVF
PGMESNSSDLPPHVDYKIRMDIDSVERTNKIKDGYWDPGPRADPFEDMRYIWGGFTYLQD
VIEQGIIRAVTGIEKKTGIYIQQMPYPCYVDDMFLRVMSRSLPLFMTLAWIYSVAIIIKG
IVYEKEARLKETMRIMGLDNGMLWLSWFISSLIPLLISASLLVFILKKGNLLPYSDPSVV
FMFLATFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTVKVI
ASLLSPVAFGFGCEYFALFEEQGVGIQWNNLLSSPIEEDNYNLTTSIYIMFFDAFLYGVM
TWYIETVFPGQYGIPRPWYFPFTKSYWFGDTQQKMPERPSSRKENSEVCIEEEPAHLELG
VFIEDLVKIYRDGKKVAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY
ILGKDIRSDLSAIRQNLGVCPQHNVLFDQLTVEEHVWFYARLKGLSEAEVKVEVEQIVLD
VGLPNKRKAKTSELSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWDLLLKYR
HGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKDVEPSL
SSCRNSSSTVSFIKKDDSVSQNSSDAGLGSDHESDTTIIDVSLISNLILKHVPKARLVED
FGHELTYILPYESAKDGAFVELFHEIDDRLSDLGISSYGVSDTTLEEIFLKVAEDSGVDV
EIADGTIPARRNRRHAFGDRQSCLRPFTEDDAFDLNDSDVDPESRETDLLSGMDGKGSFK
VKGWSLIRQQFVALLWKRFLHARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LQPWMYGEQYTFISNDVPEDAHIQKLFGALTSKPGFGTRCMSGDPIPDTPCLTGNSDWTM
PEVPQSIMDIFTNGNWTMENPSPPCECSKDDKKKMLPECPAGAGGLPPPQITPGTTDFLQ
NLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSSQVLPAGEELNDAIIQV
RKIFSLEQGKAGDRFMSSLSGFMKGLDTKDNVKIWFNNKGWHGIGAFLNVMNNGILRASL
PEGKDPSLYGISAFNHPLNLTKEQLSQVALITTSVDVLVSICVIFAMSFVPASFVVYLIQ
ERVSKSKHMQFISGVRPGLYWLANFVWDMCNYIVPATLVIIIFVCFQQKSYVSAANLPVL
ALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNLFIGINGSVATFVLDLFGNDSHNS
VNDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPFSWDMVGRNLFAMAV
QGAVFFCITVLIQYRFFIKPRWISAKLPPILDEDEDVAKERQRILSGGGQSDILELKELT
KVYRMKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFQMLTGDTDVTDGEAFLNGKSVL
SEIHEAHQNMGYCPQFDAINELLTGREHLELYAILRGVPEEDVCKVAEWGVRKLGLVKYM
DKGAGNYSGGNRRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILGIIKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPNPNLKPVMEF
IECELPGSVLKEKHRNMLQYQLPSSLSSLARLFSILSKNKSQLRIEDYSVSQTTLDQVFV
NFAKDQSDEDHSKDNSVHRKETMINISLINSFLKNDKVKESCV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccttcactcagctgggactgctgctatggaaaaactttgtgtatagaagaagg
caaacacttcagctgcttattgagatagcatggccactgtttctgttcttcatattgatc
tcagtgaggatgtcatatcccccatatgaacaacatgagtgtcactttcctaacaaggcc
ttgccttcagcggggactttgccatgggttcagggtatcatctgcaatgctaacaatcca
tgctttcgttacccaacaccaggtgaatcgccaggagttgtaggaaacttcaatgaatca
atcatctcacgccttttttctgatgcaaagaagatcctactgtacagtcagaatgacaaa
agccttggtggattccgaagtcttattaaagcactgaagcacatgcagaacacaagctca
ggatttaaactgaaagattttctcattgaaaatgagaccttgtcaacatttcttcgggaa
aatgcttcattcccggagtttgcagtgaaagaaatattggatgccgatgtaaacctggaa
aaggtgcttacaagaggctttggtgtgcgtctgaaagacctctgcaatgtaacaaaattg
gaagactttgtcaccatatctgatagcagagtgtcttcagtctctgaacacattatctgc
acatcatctaaagaatggctgaatcgcgcagaaagactttttctttcaaaccttgatttt
gtaaaacccatacggaaaaaagtgaagtcagaccctcattccatccagctggtatcggaa
gccacagaaaacctcttgcagagtctgggatccctggtagttgagctgtccagcatgaag
agctggaatgacatgagaaatgagatcctattcctgaccgagaacgccagtggatctcca
agccagatgtaccaggctgtgtccaggattgtctgcggtcacccagaaggaggcggactc
aagatcaagtcaatgaactggtacgaggacaacaactacaaagcactgtttgggggaaac
agcacagaagatgagacttctttttatgacaactcaaccactccctactgcaataatatg
atgaacaatttagaatccagtccaatatctagaatgatctggagagcactgaagcctctg
ctcattggtaaaattctctacactccagatactccagccacacaaagaatcattcacgag
gttaacaagacatttcaggaactgggtgtgtttcgagatcttggcggcatgtgggatgag
attaagccaaagatctggaaattcatggaaagcagccaggagatagatcttgttcggact
cttctccagaacaatgcaagttcaagtttcttggatgcacagttaaatggcactggctgg
tctgtgaaagcgatttccaggttcttatcaacgcactctgaagattcccagaaaactaga
ggttcagtttacacgtggagggatgttttcaacgagactgaccatgctattctaactata
tcacgcttcatggagtgtgtgaatttggataaactggagcctgctcccactgaggagaga
ttaataaacacatccatgaagctgcttgatgaaagaagattttgggctggaattgtattt
cctggaatggaatcgaacagtagcgacttgcctccacatgtggattacaaaatccgaatg
gacattgacagtgtggagagaaccaacaaaattaaagatgggtactgggaccctggtcct
agggcagatccctttgaagacatgcgctatatctggggtggatttacttaccttcaggat
gtgatcgaacagggcatcattcgagctgttacaggcatagagaagaaaactggaatttat
atacagcagatgccttacccctgttatgtggatgacatgtttttgcgagtgatgagtcgc
tctctgcccctgttcatgacattggcttggatctactcagtggctatcattatcaaaggc
atagtctatgagaaggaagcccgtctgaaggagacaatgaggattatgggactggacaat
ggcatgctatggctgagctggttcattagcagcttgattcctctccttatcagtgcctca
ctattggtcttcatactcaagaaaggaaacctgttgccctatagtgacccgagtgtagtt
tttatgtttctcgccacctttgctgtcgtgaccataatgcaatgcttcttgataagcacg
attttctcaagggcaaacctggctgcagcttgtggaggcatcatctacttcactctctac
cttccctacgtgctgtgtgtagcctggcaggattacgtgggctttactgtaaaagtcata
gctagtttgttatcaccagtggcgtttgggtttggctgtgagtattttgctctctttgaa
gagcagggggttgggattcagtggaacaatctcctctccagtcctatagaggaagacaac
tataacctcactacctccatatacatcatgtttttcgatgcttttctttatggcgtgatg
acctggtacattgaaactgtcttcccaggccagtacgggattcccagaccatggtatttt
ccatttaccaagtcttactggtttggtgatacacagcagaaaatgccagaaaggccgtca
agtagaaaagaaaactctgaagtttgcattgaggaagagccagcacatcttgaacttgga
gtattcattgaggacttggttaaaatctatcgagacgggaagaaggttgctgttgatggt
cttacactcggtttctacgaagggcaaatcacttcgtttctggggcacaatggagctgga
aaaaccaccaccatgtcgatattaactggcttgttcccacctacatccggtactgcctac
attctgggaaaagatatccgctctgacctcagcgcaatcagacaaaatctcggagtgtgt
cctcagcacaatgttctttttgaccagctgacagtggaggaacacgtttggttctacgca
aggctgaaaggactgtctgaagcggaggtcaaagtagaggtggaacagattgtactggac
gtaggcctgccgaacaaacggaaagcaaaaacaagcgagctctctggtggtatgcaacgg
aaactatcagtcgccctggcgtttgttggagggtcaaaggtcgttattctagatgaacct
acagctggagtagatccttactcccgcagaggaatctgggacttgctgctaaaatatcgc
catggccgcacgatcatcctttcaacacaccacatggacgaagcagatattcttggagac
agaattgccattatttctcatgggaagctgtgctgtgttgggtcatcactctatctgaag
aatcaactgggaacagggtactacttgaccctggtcaaaaaagatgtggagccgtcactg
agttcatgcagaaacagcagcagcacggtgtcgttcattaaaaaggacgacagtgtttcc
caaaacagttctgatgctggacttggtagtgaccatgaaagtgacacaaccatcatagat
gtgtctctcatctcaaacctcattctgaagcatgttccgaaagctcgactggtcgaagat
tttggacacgagctgacttacattttgccttatgaatctgcgaaggatggtgcttttgtt
gagctgttccacgagattgatgacagactgtcagacctgggcatttccagctatggagtc
tcagacaccaccctggaggagattttccttaaggttgctgaagatagtggagttgatgta
gaaattgcagatggcaccatccctgcacggagaaacaggagacatgcctttggggacaga
caaagctgcctgcggcctttcactgaggatgatgcctttgatttaaatgattctgatgtt
gatccagagtcaagagagacagacctgctaagcggaatggatgggaaaggctcattcaag
gtgaaaggctggagtcttatcaggcagcagtttgttgctttactgtggaaaagatttttg
cacgcaaggcgctcccggaagggattcttcgctcagattgtgttaccagctgtgtttgta
tgcattgctctggtgttcagcctgatcgtccctccttttggaaaatacccgagcctggaa
ctgcagccatggatgtatggtgagcagtacactttcataagcaatgatgtccctgaggat
gctcacatacagaagttatttggagctctaaccagcaagcctggttttggaactcgctgt
atgagtggagaccctattcctgataccccgtgcttgactggcaatagtgactggaccatg
cctgaagtaccacagagtatcatggacatttttacaaatggaaactggacaatggaaaac
ccatctccaccctgtgaatgtagcaaggatgacaaaaagaaaatgctccctgaatgcccc
gctggagctggtgggcttcctccccctcagatcactcctggtaccacagactttcttcag
aaccttacaggcagaaatatatctgactatctggtgaaaacatacgcacagatcatcggg
aaaagtctgaagaacaagatttgggtcaatgaatttaggtacggtggattctcattgggt
gctagaagttcacaagtccttcctgctggtgaggaactcaatgatgccataattcaagtc
agaaagatcttcagtttagaacaggggaaagctggagatcgatttatgagcagcttatca
gggttcatgaaagggctggataccaaagataatgtaaagatttggtttaataacaaagga
tggcatggaatcggggccttcctgaatgtgatgaacaatggtattcttcgtgctagttta
ccagagggaaaagatcccagtttgtatggaatcagcgcctttaatcaccctctgaacctc
accaaagaacagctttctcaagttgcattgatcacaacctctgtggatgttttggtctct
atctgtgtgatttttgccatgtcgttcgtgccggccagttttgtagtgtacctcattcag
gagagagttagcaagtccaagcacatgcagttcatcagtggggtcagacccggcctctac
tggcttgcaaacttcgtctgggatatgtgcaactatatagtaccagctactctcgtcatc
atcatttttgtctgttttcaacaaaagtcgtacgtttctgctgccaaccttcctgtcctg
gctctgctgctgttgttgtatgggtggtctattactcctttgatgtaccctgcatcgttc
ctgtttaaaatccccagtactgcttatgtcgtactcactagtgttaacctgttcattgga
atcaatggcagtgttgcaaccttcgttcttgacctttttggcaatgacagtcacaactcg
gttaatgatattctgaagtccgtattcctaatctttcctcacttttgtctgggaagaggt
cttatcgacatggtgaaaaatcaggcaatggccgatgctttggaaagattcggtgaaaac
cgtttcaggtcgccattctcctgggatatggttggaagaaacctctttgcaatggcagtg
cagggggctgtcttcttctgcattacagtactaatccagtacagattctttattaaaccc
aggtggatatctgcaaaacttccaccaatacttgacgaagatgaagatgtggccaaagaa
aggcagcgaatactgagcggtgggggccagagtgacattctggaactcaaagagctgacc
aaggtgtacaggatgaaacagaagccagcagtcgacaggctctgtgttggaattccccca
ggagagtgcttcggattgcttggtgtgaatggcgctgggaaaacaaccactttccaaatg
ctgactggagatacagacgttacagacggggaagcttttcttaacggaaagagcgtcctg
tcagagattcatgaagcccaccagaacatgggttattgccctcagtttgatgccatcaat
gagctgctgactggaagagaacacctggaattgtatgccattttacgtggagttcccgaa
gaagacgtttgtaaggttgctgaatggggagttcggaaactaggacttgtgaaatacatg
gacaaaggagctgggaattacagtggagggaacagacgcaaactgtccactgcaatggct
ctgattggaggtccacctgtagtattcctagatgagccaaccacagggatggaccccaag
gcacgcagagccctgtggaactgtattcttggcattatcaaagaaggaagatctgtggtg
cttacctcacacagtatggaggaatgtgaagcactttgcactcgaatggctatcatggta
aatggcaggttcaggtgccttggcagcgtgcagcatcttaaaaacaggtttggagatggc
tacacgataattcttcgagtagcaggcccaaatcctaacttgaagcctgtcatggagttc
attgaatgtgaacttcctggcagtgtgctgaaggagaaacatcgaaacatgcttcagtat
caactgccgtcctctctctcctccctggcgaggctattcagcatcctttccaaaaacaag
agtcaactccgaatagaagactattcagtatcacaaactacactcgaccaagtatttgta
aattttgccaaggaccaaagtgacgaagaccactcgaaggacaattcagttcacagaaaa
gaaactatgataaatatttcacttattaattcctttttgaaaaatgacaaggtgaaggaa
agctgtgtgtga
DBGET
integrated database retrieval system
