Polyodon spathula (Mississippi paddlefish): 121294884
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Entry
121294884 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase arih1 isoform X1
KO
K11968
ariadne-1 [EC:
2.3.2.31
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121294884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121294884
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121294884
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121294884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IBR
UBA_ARI1
IBR_1
IBR_2
Ariadne
zf-C3HC4_2
zf-C3HC4
Rcat_RNF216
zf-RING_2
zf-RING_14
zf-RING_5
zf-C3HC4_4
zf-RING_UBOX
RING_XB3-XBAT31
UBA_ARIH2_N
Motif
Other DBs
NCBI-GeneID:
121294884
NCBI-ProteinID:
XP_041074975
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All DBs
Position
19:22706242..22730831
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AA seq
538 aa
AA seq
DB search
MDSDEGYNYEFDDEEECSEDSAEEELEDDTLELGEVELVDPAEAGGERDVCGETGSSGLG
PGQDEEDYRFEVLTADQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFD
GNLEKLFSECHVVNPSKKSRTRQMNTRSSAQDLPCQICYLNYPNAYFTGLECGHKFCMQC
WSEYLTTKIIEEGMGQTISCPAHSCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNR
LLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFCFNCGENWHDPVKCKWLRKWIKKCDDDS
ETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNR
YNEDDAKAARDAQEVKSGTGDGGLAKRSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVK
QKMEEMQQHNMSWIEVQFLKKAVDVLCQCRATLMFTYVFAFYLKKNNQSIIFENNQADLE
NATEVLSGYLERDISQDSLQDIKQKVQDKYRYCESRRRVLLQHVHEGYEKDLWEYIED
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggactcggacgaaggatacaattatgaattcgacgacgaagaggagtgcagcgaagat
agcgctgaagaggagctcgaagacgacaccctggagctcggagaggtggagttggtcgat
cctgcggaggccggcggcgagcgggatgtgtgcggggagaccgggagcagcggcctgggg
cccggccaagacgaggaggattaccgctttgaggtgctcaccgcggatcagatcctccaa
cacatggtggagtgtatcagggaggtcaacgaggtcatccagaacccagcaacaattaca
agaatactacttagccacttcaactgggacaaggagaagctgatggagaggtactttgat
gggaacttggagaagctgttttcagaatgtcatgttgtaaaccctagtaagaaatcccgg
acacgccagatgaacacaaggtcctcggcacaggacctgccatgccaaatctgctacctg
aactaccccaatgcgtatttcactggcctggagtgtggacacaaattctgcatgcagtgt
tggagtgaatacctaactaccaaaatcattgaggagggaatgggacagactatttcctgc
ccagcacacagctgtgatatcctagtagatgacaatacagttatgagactgataacagat
tcaaaagtgaagttgaaataccagcatttaattactaatagttttgtagagtgcaataga
ctgttaaaatggtgccctgcgcctgattgccatcatgttgttaaagtccagtaccctgat
gctaagccggtccgctgtaaatgtggccgccaattctgtttcaactgtggtgaaaattgg
catgatcctgtcaaatgcaagtggttaaggaagtggataaaaaagtgtgatgatgacagt
gaaacttcaaactggatcgcagctaacactaaggagtgtcccaaatgccatgttaccatt
gaaaaagatggaggctgtaatcacatggtctgtcgtaaccagaattgtaaagctgaattc
tgctgggtctgtcttggaccctgggagccacatggatctgcttggtacaactgcaaccgc
tacaatgaagatgatgctaaagcagcgagagatgcccaggaggtaaagtccggaaccggg
gatggagggctagctaagcgctcccgggcagctcttcagaggtacctgttctactgcaat
cgctacatgaaccacatgcagagtctgcgctttgagcacaagctctatgctcaggtcaag
cagaagatggaggagatgcagcagcacaacatgtcctggatcgaggtgcagttcttgaag
aaggctgtggacgtgctatgtcagtgccgtgccacactcatgttcacttacgtttttgcg
ttctacctcaagaagaataatcagtccattatctttgagaacaatcaggcagacctggaa
aatgccaccgaggtgctgtctggatatctggagcgtgatatttcacaggattcactgcaa
gacatcaagcagaaagtgcaagataagtacagatattgtgagagtcggcgaagagtgttg
ctacaacatgttcatgaaggttatgagaaagacctctgggagtatattgaggattga
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