Polyodon spathula (Mississippi paddlefish): 121294893
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Entry
121294893 CDS
T07273
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03020
RNA polymerase
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121294893
09124 Replication and repair
03420 Nucleotide excision repair
121294893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121294893
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121294893
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121294893
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121294893
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121294893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121294893
NCBI-ProteinID:
XP_041075000
LinkDB
All DBs
Position
2:28298503..28319863
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTTGEIEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIREGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRMYAQ
KFIDGGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRESCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagacgaagatattcagtatgatgaagatgaggatgaaatcacgccagat
ttgtggcaggaagcctgttggattgttattagctcatactttgatgaaaagggcttggta
cgacagcagttggattcatttgatgaatttattcagatgtctgtgcagagaatagttgag
gatgcccctccaattgacttgcaagctgaagctcagcacaccactggagagattgaagag
cctcctcgttatttgctgaagtttgaacagatttacctgtctaaaccaacacactgggag
agagatggtgctccttctcctatgatgccaaatgaagccaggctccgaaatcttacgtac
tcggcgcctctttatgtggacatcacaaaaaccataattagggagggagaggaccagctg
ctgacacagcaccagaaaaccttcattggaaagattccaatcatgcttcgctccacatac
tgcttgttgagtggcctgacagatcgtgatctttgtgagttgaatgagtgtcccctggat
cctggtggatattttattatcaatggatcagaaaaggttctgattgcccaggagaagatg
gccacgaacacagtttatgtgtttgcaaagaaagactctaaatatgcttacacaggcgaa
tgtcgatcctgtttggaaaactcttctcgcccaacaagttcaatatgggtcagcatgatg
gcaagaggtggacagggagtaaagaaaagtgcaattggtcagagaatcgtatccacgttg
ccatatattaggcaagaagtccctatcatcattgtgtttcgtgctctggggtttgtgtct
gacagagacatcttggagcatattatttatgattttgatgatccagaaatgatggaaatg
gtcaaaccgtcactggatgaagcttttgttattcaggaacagaacgtggctctgaatttc
atcggttcgagaggtgcgaaacctggagtaacgaaagagaagagaattaagtatgccaag
gaagtcttgcagaaagaagtgctgccacacgtgggtgtcagtgacttctgtgaaacaaag
aaggcctatttcttggggtacatggttcataggctgctgctggctgctttaggcaggcga
gagctggatgacagagatcactatggaaacaaaagactggatctagctggacccttactt
gcttttctatttagaggaatgtttaagaacctgttgaaagaaatccgaatgtatgcacag
aaattcatagacggagggaaagatttcaatttggagttggctatcaaaacccgaatcatc
tcggatggattgaagtattctctggctactggaaattggggcgacgtaaagaaggcccat
caagcaagagctggagtttctcaggtgttgaatcgtctgacttttgcttcaactttgtct
cacctgaggcgtctgaactctccaattggtagagatgggaaactggctaaacccaggcag
ctgcataatacactgtggggtatgatttgtcctgctgagactccagagggtcacgctgta
gggcttgtaaagaacctggctctcatggcctacatctctgtgggctctcagccttcccca
atcttggagttcttggaggagtggagtatggaaaacctggaggagatttcacctgctgct
attgctgatgctaccaagatctttgtcaatggctgctgggtgggaatacacaaggatcct
gagcagctgatgaatacactgagaaaactgcgtcgccaaatggacatcatcgtgtctgag
gtctctatgattcgtgatatcagagagcgagagatccgtatttacacggatgctggaagg
atctgtagaccgcttctgattgtggagaaacagaagctgctgctgaagaggcgacatatc
gaccagctgaaagagagagagtacaataattacagttggcaggatctcgtggctagtggt
gtcgttgaatatattgatacactggaagaggagactgtgatgcttgcaatgactcctgat
gacttgcaggagaagggagttgcctattgctcaacttacacccactgtgagattcatccg
tccatgatccttggagtctgtgcctccattatccctttcccagatcataaccagtcccca
agaaacacataccagtctgctatgggtaagcaagccatgggtgtttatattacaaacttc
catgtgcgtatggacaccctggcacatgtgctgtattacccgcagaaacccttggtgacg
acacgttctatggagtacctgcgattcagagaacttccagcaggcatcaactcgatagtc
gcaattgcatcatacacaggatacaatcaagaagattctgttatcatgaatcgctctgct
gttgacagaggcttcttcaggtctgtattctatcgttcttacaaagaacaggaatcaaag
aaaggatttgaccaagaggaaatttttgaaaaaccaacacgtgaaagctgtcaaggtatg
aggcatgccatctatgacaagctggatgatgatgggttgatagcacctggagttcgtgtc
tctggggaggacgtcattattggtaaaactgtgactctgcctgagaacgacgacgagctg
gaaagcacgaacaggagatacacaaagcgagactgtagcactttcctccgcaccagtgaa
actggtattgtggatcaagtaatggtgacgctcaatcaggaaggttacaagttctgcaaa
attagggtgcgttcagtacgaattccacagattggagacaagtttgccagtaggcatggg
caaaagggtacttgtggtatccagtatagacaagaggacatgccctttacctgtgaaggt
ataacacctgatatcatcatcaaccctcacgccatcccctctcgaatgacagttggccat
ttgattgaatgtcttcagggcaaggtgtcagcaaacaaaggggagattggcgatgccaca
cctttcaatgatgctgtgaatgtgcaaaagatttcaaatctgttatctgaatatggttat
catcttagaggaaatgaggtgttatacaatggctttacaggccgcaaactgacttcccag
attttcattggtcccacatactaccagcggttaaagcacatggtggatgacaagattcac
tcgcgcgctcgtggacctgttcagatcctaaacaggcagcccatggagggtagatcgcga
gatggaggtctgcgtttcggtgaaatggaacgagattgtcagattgctcatggagctgcg
cagttcttgagggaaaggctgtttgaagcttcagatccataccaagtccatgtgtgtaat
ctatgtggactgatggcaattgcgaatacaaggacacacacatacgagtgtcgtggatgc
agaaataaaacacagatttcattggttcgaatgccatatgcctgcaaacttctcttccaa
gagttgatgtccatgagtattgctccccgtatgatgtctagttaa
DBGET
integrated database retrieval system
