Polyodon spathula (Mississippi paddlefish): 121295289
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Entry
121295289 CDS
T07273
Symbol
grin2cb
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04020
Calcium signaling pathway
pspa04080
Neuroactive ligand-receptor interaction
pspa04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121295289 (grin2cb)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121295289 (grin2cb)
04082 Neuroactive ligand signaling
121295289 (grin2cb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121295289 (grin2cb)
Ion channels [BR:
pspa04040
]
Ligand-gated channels
Glutamate (ionotropic)
121295289 (grin2cb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
DUF8168_N
Motif
Other DBs
NCBI-GeneID:
121295289
NCBI-ProteinID:
XP_041075686
LinkDB
All DBs
Position
20:17964484..18065305
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AA seq
1381 aa
AA seq
DB search
MGFPLGWLSASLWLLLWGVRGSLGRALGVPVVNVAVVFGGSSYQTEIKGRLSRENFLDLP
LEVNPVTVIVNETNPRALLTHICDTLANAHIHGLVFEDSIGTEAVAQILDFISTQTTVPI
VGISGGSAVVLTPKESGSTFLQLGASIEQQVSVMFKLMEEYDWGTFAVITSLYPGYTSFI
EHVKDFTDTSYFLWDLQDILSFEMSPDGSTRARRLLKQLDAQVMMVYCSHEEAQYLFSVA
ADAGLVGPGYIWILPSLAVGSTDTLPSEVFPVGVISVMSDRWKMSLRQRVRDGVAIVVKG
VQSFVKQRGYVPQGHTDCRSPSSSTLSNNTFYRHMLNVTWEHKDFTFNSDGYLVRPSMLV
ITLNREHEWEKVGTYEEGILVMRYPVWPRYGTFLEPVSDNRHLTVATLEERPFVIVENVD
PVTGTCVRNTVPCRKQSNRTEIFVGLTEPYTKLCCKGFCIDILKKLARTVKFTYDLYLVT
NGKHGKKVRGIWNGMIGEVYYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSN
GTVSPSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEYFSPIGYNRNLISAKDPGGPTFTI
GKSVWLLWALVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYVDT
VSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHSHMIKYNQRGVEDALNSLK
TGRLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKESKWKRSVDLALLQ
FLGDGDTQKLQTVWLTGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLL
YWKLRHSVSKSDRLDFLLAISRGIYSCFNGVEDVDGPLNIQNPDVTTNYTQANMLKMLQT
AKDIVSSAKMENSLENATKTIENWSRRSENFKGGIATRVPQVVTSDMAVCTHRLPNISSI
TDNHTPFSQRALTPTLTVHSAENPSLPLLEKQRHVARPTPIRYTLPSRGIQLNDRTLPIS
SLSSPQVATRDPPPVTNPHHGNRLYMENHHRHPRSPFVPYHELQVPDIYVKHKDPVCRKL
YPDGMVRKKRPQSLMVETPEIRRRPEPEEPIRCFTELRANHLMENHVHKVSCINSHYPRA
NANCNSCIKAYVEPEQEDVPLLGKEKLQRRASFSKATWGQHEKLQPLEEKARMDVPDLFP
RVVVNPKPSPKVYRVPGSSLCYLEPSQGHPYREPKLRHSQSTRLPSYREAVLQNAAALRR
SSTVVHRHYSTYLNSYTDLPVYVGPMAQSPAQFYEHSKEVCNLFPCMGPCPEELTLLPRS
SDRSYFYEDGGYVGGRVRGDPHLAAAALKDRDRRQVLTSRSVNNPYVPKPWSRISSLESE
V
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgggctttcctctaggctggttgagtgcctccctgtggctgctgctgtggggggtccgt
ggcagcctgggccgtgccctgggggtgccggtggtgaacgtggctgtggtattcggtggc
tcgagctaccagacagagatcaagggccggctgagccgcgagaacttcctggacctgcct
ctagaggtgaaccctgtgaccgtcatcgtaaacgaaaccaacccccgtgccctgcttacc
cacatttgtgacacattggccaacgcacacatccatggcctggttttcgaggacagcatc
ggcactgaggccgtggctcagatattggacttcatctccacccagaccaccgtccccatc
gtaggcatcagcgggggctcagccgtggtgctcacacccaaggagagcggctccacattc
ctgcagctgggcgcctccatcgagcaacaggtcagtgtgatgttcaagctgatggaggag
tatgactggggcaccttcgccgtcatcaccagcctgtaccctggctacaccagcttcatc
gaacatgttaaggacttcactgacaccagttacttcctgtgggacctgcaggacatcctc
tcttttgaaatgtctccggacggcagcacgcgggcgcgccgcctcctcaagcaactggac
gcccaggttatgatggtgtactgctctcacgaggaggcccagtacctgttcagcgtggcg
gctgatgcaggcttggtgggccctggctacatctggatcctccccagcctggcggtgggc
agcacggacacgctgccctccgaagtcttccctgtgggtgtgatcagtgtgatgagtgac
cgctggaagatgagcctgcggcagcgagtgagggacggggtggccatcgtggtgaagggg
gtgcaaagctttgtcaagcagcgcggctatgttccccaggggcacacggactgccgctcg
ccctccagctccacgctgagcaacaacaccttctacagacacatgctcaatgtaacttgg
gaacacaaggacttcaccttcaacagtgatggttacctggtgaggccttccatgttggtc
atcaccctgaacagagaacatgaatgggaaaaggtcggaacctacgaggaggggatcctg
gtgatgcgctatcccgtgtggccacgctacgggaccttcttggagcctgtctcagacaac
cggcacctgaccgtggccacgctcgaggagcggccctttgtgatcgtggagaacgtggac
cctgtgactgggacctgtgtgaggaataccgtgccctgccgcaagcagtccaaccgtaca
gagatcttcgtgggccttaccgagccctacaccaagctgtgctgcaagggtttctgcatc
gacatcctcaagaagctggccaggaccgtcaagttcacatacgatctctatctggtcacc
aatggcaagcacggcaagaaagtacgggggatctggaacggcatgattggagaggtgtac
tacaagcgtgccgacatggctattggctccctcaccataaatgaggagcgctcggagatc
atcgatttctccgtgcccttcgtggagaccgggatcagcgtgatggtggcccggagcaat
ggcactgtctctccatccgctttcctagagccatacagccctgcagtgtgggtgatgatg
ttcgtgatgtgtctctctgtcgtcgcagtcacagtgttcatctttgagtacttcagcccc
atcgggtacaatcgcaacctcatcagtgcaaaggacccaggaggccccaccttcaccatt
ggtaagtctgtctggctgctctgggcactggtgttcaacaactcagtccccatcgagaac
cctaagggcaccaccagcaagatcatggtgctggtgtgggccttctttgctgtcatcttc
ctggccagctacactgcaaacctggcggccttcatgatccaggagcagtacgttgatacc
gtgtccggactaagcgacaagaagttccagaagccccaggagcattacccaccattccgc
ttcggcacggtgcccaacggcagcacggagaggaacatccgcagcaactacccggacatg
cactcccacatgatcaaatacaatcagcgtggggttgaggatgctcttaacagcctcaag
acagggaggctggacgcctttatttatgacgcggctgtgctgaactacatggctgggaag
gatgaaggctgtaagctggtgacaattggtagcgggaaggtgtttgctaccacgggctac
ggcatcgctctacagaaggaatccaagtggaagcgctctgtagacctagccctactgcag
tttctgggagatggggacacccagaagctgcagacagtgtggctgacaggaatctgccag
aacgagaagaacgaggtgatgagcagcaagctggacattgacaacatggcaggcgtcttc
tacatgctgctagtggccatggggctgagcctgctggtgttcgcctgggagcatctcctc
tactggaaactgagacactctgtgagcaagtccgaccgcctcgacttcctcctggcaatc
agcaggggtatttacagctgcttcaatggagtggaagatgtggacggtcctctcaatatc
cagaatccagacgtaaccactaactacacccaggccaacatgctgaagatgctgcagact
gccaaggacatcgtctcctctgccaagatggagaactccctggagaatgccaccaagacc
atcgagaactggagcaggaggagtgagaacttcaaggggggcattgcaactagagtgccc
caggtggtcacctctgacatggctgtctgcacacaccgactccctaacatatccagcatc
actgataaccacactccattctcacagagagccctgacgcccacactgaccgtacattct
gcagagaaccccagcctaccactcctggagaagcagaggcatgtggcgcgcccgacccct
atccgctacaccctgccttccagagggatccagctgaacgataggacccttcccatctcc
agcctcagcagccctcaggtagccacgagggatcctccccctgtcacaaaccctcaccac
gggaacaggctgtacatggagaaccaccacaggcatccccgctctccgtttgtcccttat
cacgagctgcaggtcccagacatttatgtgaagcacaaagaccctgtttgtaggaagctg
tacccggatggcatggtgagaaaaaaaaggccccagagtctcatggtggaaaccccagag
ataagaaggagacctgagccagaagagcccataaggtgctttacagagctccgggccaac
cacctcatggagaaccatgtccacaaggtgtcctgcatcaacagccactacccgagggcc
aatgccaactgcaattcctgcataaaggcctatgtggagccagagcaagaggatgtccct
ctgctggggaaggagaagctccaacgcagggcttccttcagcaaggccacatgggggcag
catgagaagctgcagcccctggaagagaaggccaggatggatgtgccagatttgttcccc
cgagtggtggtgaaccccaagcccagcccaaaggtgtacagggtgccggggagcagtctg
tgctacctagagcccagccagggccatccatacagagagccgaagctgaggcattcacag
tccacgcgactgccctcataccgcgaggctgtcctgcagaacgcagcagctctaaggcgc
tcctccactgtggtgcacagacactactccacctatctgaactcctacacagacctgccg
gtgtacgtaggcccgatggctcagagtcctgcgcagttctacgagcactccaaggaggtt
tgtaacctcttcccctgcatggggccctgtcccgaggagctcacgctgctgcccaggagc
tccgaccggtcatatttttatgaggatggtgggtatgtgggtggcagagttcggggggat
ccccaccttgctgccgctgcgctcaaagacagagacaggaggcaggttctaacttccaga
agcgtgaacaatccatatgtgccaaaaccctggagtagaatatcaagcctggaatcagag
gtttga
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integrated database retrieval system
