Polyodon spathula (Mississippi paddlefish): 121295402
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Entry
121295402 CDS
T07273
Name
(RefSeq) tripartite motif-containing protein 65-like isoform X1
KO
K12031
tripartite motif-containing protein 65
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121295402
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121295402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-B_box
zf-RING_6
Fas1-AflB-like_hel
Motif
Other DBs
NCBI-GeneID:
121295402
NCBI-ProteinID:
XP_041075902
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Position
20:complement(21791548..21797632)
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AA seq
525 aa
AA seq
DB search
MLCAYLVRKVLFTTMDNLDCAICLDLYKTPVTIPCGHNFCMNCISEHWDKAIKEEKESAC
PQCRLSFPSRPELKKNIDLSDLVDKKRKEDSVKSPGPPSISRVAAGLCSRHGRALELYCK
VDKMCICCACVIKECSTHKKVLVEDERKDRETKLIKKSKKVDLQIELTEKNIAKMKENID
TAKELSERTEEWLSNKFCQLLQNVKQCHEAMAQYVEQEKGRELSRAEKNLHQLEQSAETL
RKHREQTEALLKKQDDVQFLQESQFIDEPPLKEVPLTVVLDLDTKVTAVTDLVSKISKLV
LEDLQKVTSPADKQEVQVSPKEKRCTEDISVNPAVSTKTPIGECYQAQYCTLSFDPHTAH
KYIRLSCDNRKAEHSSTGIQKVPAHKARFEGCCWQVLCAEGLKGGQYYWEVNVSHPWVYL
GVAYSSIKRKESDKRWYLGMNKESWSLQLNKGCCFALHGGKEERLGEHDYKRIGHFLDYP
AGTLTFYGVGSKLNHLHTFHTAFSQPLYPAFWIGEGVSVTLITPF
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgttatgtgcctatttagtcaggaaagtactttttacaacaatggacaacctggattgc
gcaatctgcctggatctctacaagacacctgtcaccatcccctgcggacacaacttttgt
atgaactgtatttctgagcactgggacaaggctatcaaagaagagaaggagagtgcctgc
ccgcaatgccgcctcagcttcccgtcaaggccagagctgaagaagaacatcgacttgtct
gacttggtggacaagaagcggaaagaagacagtgtgaaaagtccagggcctcctagtatt
agcagagtggcagcagggctgtgcagtcggcacggcagagcactggagctctactgcaag
gtggataagatgtgcatctgctgtgcttgcgttatcaaggaatgcagcacacacaagaaa
gtcctggtggaggatgagagaaaagatagagagacaaaactgataaaaaagagcaaaaaa
gtggacctgcagattgaactgactgaaaagaacattgcaaagatgaaggaaaacattgac
acagcaaaggagttgtcagagcgtacagaagagtggttgtcgaataagttctgccagctg
ctacagaatgtgaagcagtgccatgaggccatggcccagtatgtggagcaggagaagggg
agagagctgagccgggctgagaagaatctacatcagcttgagcagagtgccgaaacactg
aggaagcatcgggaacagaccgaggccctgctcaaaaagcaagacgatgttcaattcctg
caggagtctcagttcattgacgagccacccttgaaggaagttccattgactgttgtcttg
gatttagataccaaagtaactgctgtgactgacctagtatccaagatctcaaaactggtt
ttggaggatttacagaaagtgacgtctcctgctgataaacaagaagtgcaagtctctcca
aaggaaaagcggtgcactgaagacatctctgtgaatcctgctgtctccaccaagactccc
attggggaatgctatcaagcacaatactgcaccctttcttttgacccccacacagcccac
aagtacatcaggctatcctgtgacaaccgcaaagcagaacacagctcaacgggaatacag
aaggtccctgcacacaaggcccgtttcgaaggctgttgctggcaggtgctgtgtgcagag
gggctgaagggcgggcagtactactgggaggtaaacgtctcccatccgtgggtctacctg
ggggtggcctacagctccatcaagaggaaggagagtgacaaacggtggtatctgggtatg
aacaaagagtcctggagcctgcagctgaataaaggctgctgctttgcattacatggtggt
aaagaagaacgtctgggggagcatgactacaagagaattggccactttctggactatcca
gcaggcaccctaaccttctacggggtggggagtaaactgaaccaccttcacacgtttcac
accgccttcagccagccgctctacccagccttctggatcggggagggtgtgagtgtcaca
cttataacacccttctag
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