Polyodon spathula (Mississippi paddlefish): 121295438
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Entry
121295438 CDS
T07273
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04518
Integrin signaling
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121295438
04518 Integrin signaling
121295438
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121295438
09142 Cell motility
04820 Cytoskeleton in muscle cells
121295438
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121295438
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121295438
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121295438
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121295438
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121295438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121295438
NCBI-ProteinID:
XP_041075976
LinkDB
All DBs
Position
20:12491969..12601031
Genome browser
AA seq
1726 aa
AA seq
DB search
MKYRILVLFAVYLAVDLVQAGTKSFQGPCGGRDCSGGCQCFPEKGSRGRPGALGPQGPKG
PPGFQGPEGLTGPKGDKGHPGLQGPGGPKGDKGPMGVPGFPGVNGIPGHPGQGGSRGLPG
LDGCNGTMGDTGTRARDGIQGSPGFSGPTGPKGQKGEPVFVGGGIGLRGEPGLPGLDGLT
GARGPAGLPGLVGPRGRSGPAGLPGSPGLPGPIGNMGVGFQGERGDKGEVGQPGLPGQPG
TDTQVGGPSVSIVFKGDKGEPGSFGFPGQPGIPGLPGPYGIAGELGEKGIIGLPGLRGPP
GLDGQPGFPGAKGQPGFPGQPGRDGIPGRKGFPGEAGPPGPTVYYNGDGASVKGPPGDPG
PDGAPGIRGDPGFDGLPGQPGLPGLPATPGPPGTPGFPGVSGAKGERGDPGRPALGTPGS
PGRPGYPGPPGPPGLPGPSLNSSECQVVSVGPDGGIVKGPGQQAQISVGDMGQPGLPGGR
GPPGSPGPSGLQGDPGYCLCQGRGDNDFNFQGRPGPQGLPGSPGFPGVKGIAGDRGSEGL
AGPAGPPGVAGERGYNGLKGQKGDPYVPVSRGPPGDPGVPGLRGLSGERGRPGRDGLPGF
PGRPGPPGDTSPGLIGDKGLPGFPGANGRPGERGPAGIGFPGPAGIRGEPGEEGVNGIPG
LPGQPGPPGDCCCGGEVGNGLLDTEGGITLPCKIPGTEGAAGLPGLPGTPGLKGQPGLPG
MPGLPGFDGQKGERGRPGFGGQPGPSGFPGPRGDEGTPGLPGMDGREGAPGKNGSPGLRG
PKGAPGEVLGVERGPPGFPGLSAGPGDKGLPGDPGLPGQKGIDGRPGISGAKGKRGQDGF
PGIPGLPGPPGAGGLDGIPGSLGQAGRVGFPGAPGCEGFPGLKGSSGDPGPPGPAGMKGL
PGLPGASGLPGQKGFPGGPGPEGREGRPGVNGRNGEKGSPGMVGFPGMPGTAGLPGAPGL
KGPRGFPGRVGPSGENGGQGQKGDRGSPGVPGERVVPLHLMSKGERGDNGYPGTNGFPGP
RGDKGLPGQGGRPGRPGLPGFQGKEKGSPGDPGYPGPSGQPGFPGQKGSPGIIGFTGMPG
ERGSDGFPGPPGFPGSPGTPGQKGDRGDATGSPGAPGNKGFPGQSGTPGITGNSGQPGDA
GFPGNPGINGQKGLPGNPGRSGLPGSPGFPGARGNPGFPGSSGLPGSPGFPGSNGTPGQK
GFAGPPGLDGLNGLQGPKGPPGTPGLSEPGAAGQPGAQGLKGEPGTPGAAIGPQGFPGQK
GGKGEPGSPGVPGFPGLPGPAGISLPSNIPGRPGDMGPPGRDGETGFPGRTGPPGPPGPR
TAQGDRGDPGFPGVPGLPGSKGDRGPAGSSGIPGAPGLKGSRGDPGIMGMPGTDGFPGDP
GYPGPKGQKGSPGYKGKPGPPGQTYRLENIVTPTGDSGLPGIDGEPGESGFPGRPGEMGR
PGQKGLPGITGKTGRNGKPGPDGVLGDPGPDGIPGPPGLQGAPGKQGGVGLPGNSVRSVS
VGYTLVKHSQSDQVPPCPLGMDRLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFI
YCNINEVCYYASRNDKSYWLSTTAPIPMMPVSHNEIPQYISRCSVCEVPSLAVAVHSQDI
TIPPCPAGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHY
FSNKYSFWLTTVEPRRQFVEAPPSETLKAGQLRTRVGRCQVCVKNL
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacaggattttggtcttatttgctgtttatctagcagtcgatttggtccaagcg
ggtaccaagtcattccagggtccgtgtggaggcagggactgcagcggaggatgccagtgt
ttccctgagaaaggcagtcggggtcggccaggtgccttggggcctcaagggcctaagggg
cctccagggtttcaaggtccagaggggttaactggaccaaagggcgataaggggcacccc
ggactgcaagggccaggaggccctaaaggagacaagggaccaatgggggttccaggtttt
ccaggtgtcaatggaattccaggtcatcctggccagggcggctccaggggtctgccaggc
ctggacggctgcaatgggacgatgggagacaccgggaccagggcgagagatgggatacaa
ggatcaccaggcttctcaggtcccactggtccaaaaggtcagaaaggagagcctgtcttt
gtgggaggaggcattggtttgaggggagagccggggctgccaggtctagacggtttgaca
ggtgcgaggggtccagctggcttgccagggctggttggtccgagaggtcgcagtggtcct
gcgggtttaccaggttccccaggcctcccaggacccattggcaatatgggggttggtttc
cagggagaaagaggagacaagggagaggtgggccagcctggcctcccagggcaaccaggg
acagacacccaagtaggcgggccgtcagtgagcattgtcttcaaaggagataagggcgag
ccgggcagctttggttttcctgggcaacctggtattcctggactaccggggccctatggg
attgctggagagctgggtgaaaagggcatcattgggctgcctggacttcggggaccacct
ggattagatgggcagcctggctttccaggagcaaagggtcaaccaggcttccctgggcaa
ccaggaagagatgggataccgggacgtaagggtttcccaggggaagctggtccacctggt
ccaactgtatattataacggagacggagcttctgtaaaaggccctccaggagatccaggc
ccggacggggctccaggaatccgaggtgatccagggttcgatgggctgccaggacagcca
ggcctcccagggctcccagccactccaggtccaccaggcaccccaggtttccctggagtc
tcgggagccaagggagaaagaggggaccccgggagacctgccttaggaacgcctggttcc
cctgggagaccgggatacccaggacccccgggcccacctggactccctggacccagcctc
aactcttcagagtgccaggtggtctccgttggcccagacggtggcattgtcaaaggtcca
ggacagcaggcccagattagtgtgggagacatgggacagccaggattgcctggaggtcga
gggcctcctgggagcccagggccaagcgggctccaaggagatccaggttactgtctctgc
caaggaagaggggataacgatttcaacttccagggcagacctgggccccagggcctaccc
ggttcacctggctttcccggagtgaagggaattgctggagacagaggatcggaaggtctg
gccggaccagcaggccctccaggcgttgcaggggaacgcggctacaacggactcaaggga
cagaagggagacccgtacgttccagttagcagaggccctccgggagatccaggggtacct
ggactcagaggcctctcaggcgagcgggggagaccaggccgagatgggctcccaggcttt
ccaggccgaccgggcccaccaggagacactagcccaggtctcatcggagacaaaggcctc
ccaggattccctggtgctaatgggcgccctggggagcgaggccctgctgggattggtttc
cctggtccggcagggatccgtggtgagccaggtgaagagggtgtgaacggcattccaggc
ctgcctggccagcccggacccccaggtgactgttgctgtggtggagaggttggtaatgga
ctcttagacacagagggaggtatcaccttgccttgtaagattcccggaaccgagggtgca
gccggactgcctggactcccaggaacgccaggattgaaaggacagccaggtttgcccggc
atgcctggattgccagggtttgatgggcagaaaggagagcgtggtagacctggatttgga
gggcagccaggaccctcaggtttccccggaccgagaggtgacgagggcaccccaggtctc
ccgggtatggacggcagagaaggggctccaggaaagaatggctccccagggctgcgtgga
ccgaagggggcccctggagaggtgttgggagtggagcgaggaccccctgggtttccaggc
ctgtctgcagggcccggagacaaggggctaccgggagacccagggctgccaggacagaaa
gggattgatggccgacctggcatttccggtgccaaaggcaagcgtggtcaggatggtttc
cctggcatccccggtttgcctggtcccccgggggctgggggtttggatggcattcccggc
tctcttggacaagccgggagagtaggcttcccaggagcacctggctgtgaaggctttcca
gggctcaagggctcatcgggggaccctggccccccagggcccgctggtatgaagggccta
cctgggctcccgggggcctcgggactaccggggcagaaggggttccctggcggacccgga
ccagaagggagagagggtcggccaggagtaaatggaagaaatggtgaaaagggctcccct
ggcatggtagggttcccaggaatgcccggcaccgcaggactgccaggggccccggggctg
aagggaccgcgtgggttccccggcagggtcggacctagtggagaaaatggggggcaagga
cagaaaggtgaccgtggaagcccaggtgtgcccggtgagagagtggtcccactccatctc
atgtcaaaaggagagagaggagacaatggatatccaggaacaaatggattccctggccca
cgaggtgataaagggctgcctgggcagggaggtcgcccaggccggccaggtctgccgggc
ttccaagggaaggagaaaggctctcccggggacccaggctacccagggccaagcggacaa
ccaggattcccaggacagaagggctctcccggcatcatcggcttcacagggatgccaggg
gaaaggggttccgatgggtttccagggcctcctggattcccaggcagtccggggacaccc
ggacaaaaaggtgatcgcggcgatgccactggatctcctggagcccctggaaacaaagga
ttccccggccagtctggaactcctggcataacaggtaacagtggccagcctggtgacgca
ggtttccctggaaaccccggaatcaacggacagaaaggtttgcctggaaacccaggccgc
tcaggactgccaggtagccctggtttccccggtgctcgtggtaaccctggttttcccgga
tcaagtggactgcctggatctcctggattccccggctctaacggcacccccggacaaaaa
ggtttcgctggcccccctggtctggatggtctgaacggattgcaggggccaaagggccca
ccaggaacaccaggtctgagtgagcctggggctgctggccagcctggtgcccagggactc
aagggggagcctggtactccaggagcagcgatagggccacaaggcttccctgggcagaag
ggtggcaagggagagccaggttctcccggtgttcctggcttccctgggctccccggtcct
gctgggatttccctgccctcaaacattcccgggagaccgggcgatatgggccccccaggg
cgggatggtgaaacaggtttcccaggcagaactggtccccccggcccccctggtcccagg
actgctcaaggagatagaggggacccaggcttccccggcgtgccaggattacccgggtca
aagggagaccgaggacccgctgggtcctcgggaatcccaggggcccctggtctcaaaggt
agccgtggagaccctggcattatgggaatgccaggcacagatggattcccaggagatcct
gggtacccaggacccaaaggtcaaaaagggagtccaggttacaaaggaaaaccaggccca
ccaggtcagacctatcgtctggagaacattgtcacgcctactggtgactctgggctgcct
ggaatcgatggagagccgggagaatcaggattcccgggacggccgggagagatggggagg
ccagggcagaaaggccttcctggtatcactgggaagactggaaggaatgggaagcctggc
cctgatggtgttttgggagatcctggtcccgatggcattcccggaccccctggtttgcaa
ggtgcccctgggaagcagggtggagtgggtctgcctggtaactctgtccgcagcgtcagt
gtcggctacacgctggtgaagcacagccagtcagaccaggtgcccccctgcccactggga
atggaccggctgtgggaggggtatagcttgctgtacgtggaaggacaagagaaagcacac
aaccaggacctgggtcttgccggctcctgcttgcctcgcttcagcaccatgccgttcatc
tactgcaacatcaatgaggtctgctactacgccagccgcaatgacaagtcctactggctc
tccaccaccgcgcccatccccatgatgccggtgtcccacaacgagatcccgcagtacata
agccgctgctctgtgtgcgaggtgccctcactggccgtcgcggtgcacagccaggacatc
accatcccgccctgccctgcgggctggcgcagcctctggatcggatactccttccttatg
cacacagcagccggtgcggaaggggggggtcagtccctggtctctcccggctcctgtctc
gaggatttccgcgccacacctttcatcgagtgcaacggcgcccgtggcacctgccactac
ttctccaacaagtacagcttctggctgaccaccgtggagccgaggcggcagttcgtggag
gctcccccctcggaaacgctcaaagctgggcagctccgtacacgagtcggccgctgccag
gtctgcgtgaagaacttgtag
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