Polyodon spathula (Mississippi paddlefish): 121295443
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Entry
121295443 CDS
T07273
Name
(RefSeq) synaptopodin-2-like
KO
K24066
synaptopodin-2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121295443
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121295443
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
121295443
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
121295443
NCBI-ProteinID:
XP_041075992
LinkDB
All DBs
Position
2:33392298..33439844
Genome browser
AA seq
1310 aa
AA seq
DB search
MGTGDYICITVRGGAPWGFRVQGGKDKMQPLQVSEIEEGGRASLAGLCKGDEVVSINGEP
CSDFSHSEATSVIESLADSLQLLVKRSSSGLHELSDPDSEKAYFGETSASVGLESTTLQI
WPSSKAPTTRELYISESQDEAYYGETESDTDLSGGTRQGNPKFHGTDREYPRERCSLETP
SRGREKGAFYPGAVVELQLSLSDHRYRDPQAADVSVTRGEKSSASWVNQEEEDNQGLESA
NSESNRQEPVRTIETQSVQLSRVKRQVLGVDELVSSSSSLGRVEVTLECPVRCTQQQQEE
EVLVCRSESGLSGCDSQVEGGHTEAPPASVSFGVSSEGEEQGEEERDSESGKDHSRPNKH
RARHSRLRRSESLSEKQVKEAKSKCKRIALLLTAAPNSSNKGVLMFKKHQQRAKKYTLVS
YGTGESEPEEGEEGEEGYDKAIEVTLLATSESEIDEDFFTDTNGRARIVTFDWDTGLLEI
EKKLNDEEEMQRLPETKGKGALMFAKRRQMVDQITAEQEEMRRMGIPVEDHRDVDTQQSS
EVTQSTSYQMQESSYSQSSMQTKSDMSQGYFDVNQQMKLQQQQQQLNHGHPPGGPNVNGV
NGRSEMVHHSSAYQTTEYQKSNVTNRTARPFTGVQNRVPAPFSPTRSVTSPVSDHPAPHY
SSLSSQTENKYRVVIPPVPVNIHSQVWSPTGSGEQIASRDERISVPAIRSGILQETRKRN
TGKPMFTFIEQPKVSPNPELLSLLNKGDKRAPLAGFESGPEEDYLSLGAEACNFQQSSAV
KQKMPPPVAPKPSINPASPPWSPHPDVSNQAPSFPIQKAVPAPAPAPAPVSIQALPPQQP
VSMWSQPQTTLKTAVAPHDPQSVTLAHSYSSKTPPTTPVGNVAPTGGVSQAYEMQALKGR
GAELFARRQSRMEKFVVDSSTVQANKPRSQSPTPSLPCSWKYSSNIRAPPPLSYNPIHSP
AYPPGAIKNQPQSGPTGKTKTKGKKPTKVLHALDVMKHQPYQLNSSLFTYDPPTDAKTPL
PKAAPASSKQPIMYEPLPPVKSAGQMNAAYSAPHQQPQVCRGPSYGLSPLSPAVQVGSFQ
LPANAYTAPSYPLYTKQESSSLGGAMLRAPRPKFSAKKSGVAAQGIQRSHSLILPRRTSP
PGYQHSSPCATPVFLPTNRPVERQSSLLDKDHKPPTPWQAAARNPLGFVDEAFTFQNIQE
SIASNVISAAQRKTRPEPPAEWKERVSYVPPPKSGYSYLGQGTAPSPSKSAYSAPASTAQ
YWSPVKHSFNQQRSMTESDIQYKGSGSHYGVYGKSGSDPNYNTYPTAWRQ
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggggattacatctgcataacagtgcgcggaggagcgccatgggggttcagg
gtgcaaggtggcaaagacaaaatgcaacctttacaggtctcagagattgaagaaggaggc
agggctagccttgctggtctgtgcaaaggagatgaggtggtgtcaataaatggagagcct
tgttcagacttctcacactctgaagccacatctgtcattgaaagcctggctgatagcctg
caattgcttgtgaaacggtcttcttctggattacatgagctctccgatcctgactctgag
aaggcatactttggtgaaactagtgccagtgtgggccttgagagcacgactctgcagatc
tggccatccagcaaggcccccactacgagagagctttacatctctgagtctcaagatgaa
gcctactatggagaaacagagagcgacacagacctgtcagggggcaccaggcagggaaac
cccaaatttcatggaacagatagggaatacccaagagagaggtgcagcctagaaactcct
agcagaggcagagagaagggagcattctacccaggagcagtagtggagctccagttgtcc
ctctcagatcacagatacagagacccccaggcagctgatgtcagtgttacgaggggtgag
aaaagcagtgcttcatgggtaaatcaagaagaagaggacaaccaaggccttgaatccgcc
aactcagagagtaacagacaggaacccgtccgcaccattgaaacccagtccgtccagctg
tctcgggtcaaaaggcaggtgcttggagtagacgaattggttagctcctcatcctcgctc
ggccgagtggaggtgaccctagagtgccccgtccggtgcacgcagcagcagcaggaggag
gaggtattggtctgcaggtctgagtctggtctgagtgggtgtgattctcaagtggaagga
gggcacactgaagcacctcctgcttctgtctcctttggagtttcatcagagggtgaagag
cagggagaagaagagagggattcagagtcagggaaggatcacagcagacctaacaagcac
cgggcaaggcactccaggctcaggcgcagtgagagcctgtcggagaagcaggtaaaggag
gccaaatctaaatgtaagcgcattgccttgctgctaactgcagctccgaattccagcaac
aagggggtgttaatgttcaagaagcaccagcagagggccaagaagtacacacttgttagc
tacgggaccggagagagcgagccagaggagggcgaggagggtgaggaaggctacgacaaa
gccattgaggtcactttactggccaccagtgaatcagagattgacgaggatttcttcact
gataccaacggccgagcccgcattgtgacatttgattgggatacaggattgctggaaata
gagaagaaacttaacgacgaggaagagatgcaacgtctgcctgagaccaagggcaaaggg
gccctgatgtttgccaagaggaggcagatggtggaccagatcacggctgaacaggaagag
atgcgaaggatggggataccagtggaggaccacagggatgtcgatacacaacagagttca
gaggtcacccaaagcacttcttaccaaatgcaagagagctcttactcacagtcctcaatg
caaacaaaaagcgacatgagccagggttactttgatgtcaatcagcagatgaagctacag
caacagcaacagcagctaaatcatggtcaccctcctggagggcccaatgtaaatggagtc
aatgggaggtctgagatggttcatcacagttctgcttaccagacaactgaataccagaag
tccaatgttaccaacagaacagccaggcccttcactggtgtgcagaacagagtgccagca
ccgttttcacctactagaagtgtgaccagcccagtgtcagatcatcctgccccacactac
tcttctctcagctctcaaacagaaaacaagtacagggtagtaatacctcctgtgcctgtc
aatattcactcgcaagtgtggtcacctacaggctctggggagcagattgcatcccgagat
gaacggatctcagttccagcaatcaggtccgggattttgcaagagacacgaaaaaggaac
actggaaagcccatgtttaccttcatagagcaacccaaggtatcacctaaccctgagctc
ctgtcccttcttaacaaaggggacaagcgggctccgctggcaggctttgagtcaggccca
gaggaagactacctcagtctaggtgctgaggcttgcaattttcagcagtcctccgccgtc
aagcaaaagatgcctcctcctgtagctcccaagccatctatcaacccagcgtcaccccct
tggtctcctcacccagatgtgtccaaccaagctccatcctttcctatccaaaaagcagta
cctgctcctgctcctgcgcctgctcctgtttctattcaagccctgccaccacagcaacca
gtcagtatgtggagccagcctcaaaccactttgaagactgcggtggctcctcacgatccc
cagtcagtgaccttggctcattcatattcctctaaaacaccaccgaccactccagttggt
aatgtcgctccaactggtggagtgagccaagcctatgagatgcaagccttgaagggtaga
ggtgcagagctgtttgcaaggaggcagtctcgtatggagaagtttgtggtcgactcctca
actgtgcaggccaacaaacccagatcccagtcaccaaccccatccctaccttgctcatgg
aaatactcatccaacatcagagcccctcctccgttgtcctacaaccctatccattctccc
gcctaccccccaggggcaatcaagaaccagccccagtctggccctacagggaagaccaaa
accaaagggaaaaaacccaccaaagtcctccatgctttggatgtcatgaaacaccaacct
tatcagctgaactcctctctcttcacctatgacccacccactgacgccaaaacccctctg
cccaaagctgcccctgcctcttcaaaacagcccatcatgtacgaacccctgccccctgtg
aagtcagctggacagatgaacgctgcgtattctgccccacaccagcagccccaggtttgc
agaggaccatcctatgggttatctcctttgtcgccagctgtgcaagttggttccttccag
cttcctgctaacgcctatacagcgccaagctatccgctgtataccaagcaagagtcatca
tccttagggggcgctatgcttagggctcccaggcccaagttctcagccaagaaatctgga
gtagcagcccagggtattcaaaggagtcattcacttatcctgcctaggaggacatcacca
ccaggctaccagcacagctccccctgcgctacccctgtattcttgcctactaacagaccg
gtagaaagacaaagctctttgctggataaagaccacaagccaccaacaccttggcaggct
gcagcgaggaaccctctgggtttcgtagatgaagcttttaccttccaaaacatccaagag
tccatagcttccaatgttatttcagcagcacagaggaaaacaagaccagagccgccagcc
gaatggaaggaaagggtgtcctatgtaccacctccaaaaagtggatacagctacctgggg
caaggaactgccccttccccgtcaaaaagtgcctactcagctccggcatccacagctcag
tactggtctccagtcaaacactcctttaaccaacagcggtcaatgactgaatccgacatc
cagtacaagggttcaggatctcactatggggtgtatggcaagtccgggagtgaccccaat
tataatacatatcccactgcctggagacagtaa
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