Polyodon spathula (Mississippi paddlefish): 121295450
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Entry
121295450 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM-like
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121295450
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121295450
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121295450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_16
Prok-RING_4
zf-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
121295450
NCBI-ProteinID:
XP_041076001
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All DBs
Position
20:11928428..11942213
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AA seq
645 aa
AA seq
DB search
MENSDSADQGGSEQSEAQRQRQLDRLDREEAFYHFVNNLSEEDYRLMRDNNMLGTPGEIT
EEELLGRLQQIKDRPEQQNSGESRNEENREDGPEATEDGSNGDSILDWLNSVRQTGNTTR
SGHRGNQSWRAVSQTNPNSGDFRFSLEININRNLAEQQARVEGEQLVREDGEQPETMEGE
LPMDITPEPEALTTVRGPEPELVPEPELEPEPPRPETPPAVLPPQPQSPEVEEPTRRGQR
RARSRSPELRITRARNERSRSPLNLGGEVLRRARRSTPLQMPPSPVEPQIEGSSRTRQHV
LSRQSTVEYDVQMENAAAGADTDSAPVPIPIPVPASAPVEFVEASREPENPSETASSSEA
SAAGRRPPTIMLDLQVRRVRPGEYRQRDSIASRTRSRSQTPNNTYSYESERGGFRRTFSH
SERAGVRTYVSTIRIPIRRISDAGLSEATSMALQTMIRQIMTGFGELSYFMDSDSDSDSN
RGQNPVLEPPESQIPSNSSNSSVPETPEPQTTEEHRDTATEISSPTTAGRESRGARGPIS
LEEPGSLPFLRLAHFFLLNDDDDDQPRGLTKEQIDNLSTRNYGENDALKTCSVCIMEYIE
GNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSSNRESVV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcggacagcgcagatcaaggaggcagcgagcagtctgaagcacagcgccag
agacagctggataggctggatcgagaggaggctttctaccacttcgtgaacaacctgagc
gaggaagactaccggctcatgagagacaacaacatgcttggcactcctggtgaaattact
gaagaagagttactgggtcgcctacagcaaattaaggatagaccagagcaacagaacagt
ggtgaaagcagaaatgaagaaaatagggaagatggtcctgaagccacagaagatggctct
aatggagactccattctagactggttgaactctgtgagacaaactggaaacactacgaga
agtggccacagagggaaccagtcgtggagggcagtgagccaaactaacccaaacagtgga
gactttagattcagcttggaaatcaacatcaaccggaatttagcagagcaacaggccagg
gtcgagggggagcagctggtgagggaagatggtgaacagcctgagacgatggagggggag
ctgcccatggacatcactccggagccagaggcgcttactactgtcagggggccggagccc
gaactggtgccagagcccgaactggagcctgagcctcccaggcctgagactcctccagca
gttttacctccacagccccagagtcccgaagttgaggagcccactcggaggggacaacga
agggccaggagtcgaagcccggaattgaggataactagagctcgaaacgagaggagccgc
tcgccgttgaaccttggaggggaggttctgcggcgggctcgccgcagcacaccattgcaa
atgccaccttccccagttgaacctcaaattgaaggaagctccagaactagacaacatgtg
ttatcaaggcaaagcactgtggaatacgatgttcagatggagaatgcagctgcaggagca
gacacagactctgctcctgttcctattcctattcctgttcctgcttctgctccagtagaa
tttgtagaagcctctcgagaaccggagaacccctctgagactgcttctagcagcgaggcc
agtgcggccgggaggagaccccccaccatcatgctggaccttcaggtgcggagagttcgt
cctggagagtaccgccagagggacagtatagccagccgcaccaggtcccgctcgcagaca
cccaacaacacctactcatacgagagcgagcgagggggattccggcgcactttctcccat
tctgagagggccggcgtccggacttatgtcagtaccatccgtattccgatccgcagaata
tcggatgcagggcttagtgaggcaacatccatggccctgcagactatgatcaggcagata
atgactggctttggagagctgagctattttatggatagtgatagcgactcggactccaac
agaggccaaaaccctgtgttggagcccccggagtcacaaatccccagcaacagtagcaac
agctcagtcccagagaccccagagccacaaactacggaagaacacagggacaccgccact
gaaatcagctcacctaccacggccggaagggagagccgtggagcccggggtcccatcagt
ttagaggagcccgggtcattgccattcctccgattggcacactttttccttttgaatgac
gacgacgatgaccaacccaggggtctcaccaaagaacaaatcgacaacctctccaccagg
aattacggggagaatgacgcgttaaagacttgcagtgtgtgcataatggaatacatagaa
ggaaacaagctgcgcaagcttccctgctcccatgagtatcatgtccactgcattgaccgc
tggctgtcagaaaactcaacgtgtcccatctgtcgcagggcagtcttggtctcaagcaac
cgagagagtgtggtgtaa
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