Polyodon spathula (Mississippi paddlefish): 121295473
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Entry
121295473 CDS
T07273
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121295473
03036 Chromosome and associated proteins [BR:
pspa03036
]
121295473
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121295473
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121295473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
121295473
NCBI-ProteinID:
XP_041076042
LinkDB
All DBs
Position
20:complement(31094662..31116513)
Genome browser
AA seq
1710 aa
AA seq
DB search
METDEKELPHQSGLGAQYETLHWGHQPSSHIWDQVIIDRSDTEAWPSISCSESHVPSECT
MDIDSTTEISSSNMSMATGPGQQSHFSAHHPSSKNSGNHSGSMVFNQGGASQGWGSGPTH
CPSAIGSDRKTDSMPMGGRGQPCWGTSNFNLNLNPSANPAAWPVLGHEGDGMVGGGPRGN
NPTPPPNLCSPASAPPAQGGGGCIGSTNGNHVGGSGNSAWGSMLPPDPTESRPSPSTNVS
FSVEPQNLSTDGPNNTKQQSLSPIHGLPSWGSVPVDMGPLVQPQVNGEGGSLWVNGDAKP
TGSKDSAWDSGPSSGPGILTPWGQGGGNTGAWGRLACSGGGDWGKHSREAKGWETSGSPL
QEQPVSWSNAPASEGSNDSLEGRSRRMKRPHGELDAPLPLPRQDLDPRVLSNTGWGQIPV
RQHTAWELEEMARFDHKSNTGADSWSTGSSSSSSSGPPPVPATASTDPAAAQVSNSGGKG
EGSSSSTSAAPGWGNPAPVIATPASSLPSSSWGEAISKKAPRGHGGWGEPSAGSSNSTPS
KGGMSWGQEEKSPSWDDPPAKPKPQSWGEGPKRGHGWGTGASGGGDWGEPREEKKNGLTP
VSWEENPQNAGWGKQGQEQGAGAGVGFGGGWMEAQRPSVPVQGWGGKTQDNSNSSGSVGS
LGGADTVKQCGTGWGGGGEGGGGSKQEQGGEPTGWEEPSPPSVRRKMEIDDGTSAWGDPS
TYNKIVNLWDKNNPVIQSGPSKHAASNNHGNAAASNNHGNAAASNNHGNAAASNNHGNAA
ASNSNHHHHHSSHAQSHTQSHSQSHSHAPSNTNNSPPEQTTPHQPSTPQSRSVLAGPGWG
DLPSAHLKPEPSWGEPVSPATAVDNGTSAWGKPPGSCGGWGDNPSDPSGPYGRGNPPSGL
APCKPASKSMQDSWGGSPDELGGWDREEGDVWNSAASQESNSSCSSWGNLPKKGLQKVIK
VPSKQDEAWILSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKSALDKRGMGM
CDYNSLLSKPLGCRPPAISKESSSDRSPFLDKDGGLVEDPPASPFLPSPSLKLPLSSSAL
PSQALGGVPSGLTMQNMNNRQMQSSMFGNSGAAQFRAMLQQQQPAVPPLSSSQPSVRTQV
PQFLSPQVQAQLLQFAAKNIGLNPALLTSPMNPQHMTLLNQLYQLQLSYQRLQIQQQMLQ
AQRSVSGPIRQQEQQVARTINNMQQQIQQHQRQLAHALLMKQQPPPHPGLHPGTGKSALD
SFPPHLQAPGLSGLQTKEQQCSPNSFSSHPLSGLNPNMNVNSMEVGSGLSMKDSSQSQSR
LPQWTHPNSMENLSGTSSPLEQSLSKHGAIPAGPSIGPPGKSPMDDSYIPYNLIPSSESP
ASPLVAPDNWTQAKSANDKICNGTNINWPPEFCPGVPWKGLQNIDPETDPNVTPGSVPSG
PTINTNIQDVNRYLLRDRSGGKLSDIKSTWSPGPISHPQASLSHELWKVPQGPRNPSVPT
RPPPGLTNTKPSSTWGGNSLGLTPGWSSSYTSGTTWSTDSSARTSSWLVLRNLTPQIDGS
TLRTLCMQHGPLLTFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEE
VNRFFAQGQSLTPTTSWQAHPGTNQTRLGGAGTGHWNSGGGKGGSELLWGGVPQFSSLWG
PPGGEDSRGIGSPTPINTLLPGDLLSGESM
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggagacagatgagaaagagttgccccaccagagtggccttggagcccagtatgagact
ctccactggggacaccagcccagcagccacatctgggatcaagtgatcatcgaccggagt
gacacggaggcgtggccttccatttcctgcagcgagagccacgtcccctcagaatgcacc
atggatattgactctactacagagataagcagcagcaacatgagcatggccacggggccc
gggcagcaaagccacttctcggcccaccatcccagcagtaaaaacagcggcaaccactct
ggaagcatggttttcaaccagggcggagccagccagggctggggttctgggcctacccac
tgcccctctgccattggcagtgacaggaagacagacagcatgccaatgggagggaggggt
cagccctgctgggggacctccaactttaacttgaacctgaatcctagcgccaacccagct
gcgtggccagtactggggcacgaaggagatggaatggtgggcggtggcccaagaggcaac
aaccccactcctcccccaaacctctgcagcccagctagtgccccaccagcccagggaggg
ggcgggtgtataggcagcactaatggaaaccatgtagggggcagtggcaacagtgcctgg
gggagcatgcttccaccagacccaacagagtcacggccctcaccgtccacgaatgtgtct
ttcagtgtcgaacctcagaaccttagcactgatggaccaaataacactaaacagcagtcc
ctgagccccatccacggcctgcccagctggggttctgtccctgtggacatgggacctctt
gtgcaaccacaggtcaatggggaggggggctcattgtgggtgaatggagacgccaagcca
acaggttccaaggattcagcttgggattctgggccgtccagtggccctgggattctgaca
ccttggggtcaaggcgggggtaacacaggggcctggggccgattggcctgcagtggaggt
ggagactggggcaagcattccagggaggccaaaggttgggagacatcaggctcccccctg
caggagcagcctgtttcctggtccaacgcccccgccagcgaaggaagcaacgacagcctt
gaagggagatcccgcaggatgaagaggccacatggggagctcgatgctccccttcccctg
cctaggcaagacctggacccacgggtgctatccaacactggctggggccagatccctgta
cggcagcacacagcctgggagctggaggagatggcacggtttgatcacaagagcaacacg
ggggccgactcctggagcacaggatcatcttcatcatcctcttctggtcccccgccagtg
cctgcaactgccagcactgaccctgctgctgcacaggtgtctaactcaggtgggaagggt
gaagggtccagttctagtacctcagcagctccgggatggggaaaccctgccccggtgata
gccacgccagcctccagcctgcccagctctagctggggcgaggcaatcagcaagaaagca
cccagagggcatggaggatggggggaaccctctgcaggcagctccaactctactccctcc
aaaggtgggatgtcctggggtcaggaggagaagtctcccagctgggatgacccacctgct
aaacccaaacctcagagctggggcgagggacccaagcgtggacatggctggggtacaggg
gcaagtgggggtggagattggggtgagcccagggaggagaagaagaacggcttaactcca
gtctcttgggaagagaacccccagaatgctggctggggaaagcaaggacaagaacaagga
gcaggagccggggtcgggttcgggggaggttggatggaagcacagaggcccagtgtgccg
gtgcaaggatggggaggcaagacccaggacaatagtaatagcagcggcagcgtagggtcc
ttggggggagcagacacagtgaaacagtgcggaacgggctggggaggaggaggggaaggt
gggggtgggagcaagcaagagcaagggggcgaacctactggttgggaagagccctctcct
ccctccgtgcgccgcaagatggagatcgacgatggtacctcagcttggggagacccgagc
acctacaacaagattgtcaacttgtgggacaaaaacaaccctgtaattcagagcggcccc
agcaagcatgccgccagcaacaaccacggcaacgctgccgccagcaacaaccacggcaac
gctgccgccagcaacaaccacggcaacgctgccgccagcaacaaccacggcaacgctgcc
gccagcaacagcaaccaccatcatcaccacagcagccacgcccagagtcacacccagagc
catagccagagccacagccacgcacctagcaacacaaacaacagcccgccagagcaaacc
acacctcatcaaccaagtaccccccagagcagatctgtactcgctgggccaggatgggga
gacttgcccagtgctcatctgaagcccgagccttcgtggggagagcctgtctccccggca
acagcggtggataatgggacctcggcctgggggaagccccctggcagctgcgggggatgg
ggggacaacccctccgacccatcagggccctacggcagggggaaccccccctcaggactg
gccccctgcaagccagcctccaaatctatgcaagatagttggggaggcagtccggacgag
ctgggcgggtgggatcgggaggagggggatgtgtggaacagcgctgcttcccaggagagc
aactcgtcctgcagctcctgggggaacctgcccaagaagggactgcaaaaggtcatcaag
gtccccagcaagcaggacgaggcctggattctgagccggctgatcaaacagctcacagac
atgggcttcccacgggagccggctgaggaagccctgaagagcaacagcatgaacctggac
caggcgatgagtgccctgctggaaaagaagagcgcgctggacaagcgggggatgggaatg
tgtgactacaacagcctgctctccaaaccactgggctgccggccccctgcaatctccaaa
gagtcttcctcggaccgatcccctttcctcgataaggacggtggcctagtggaagacccc
ccagcctcaccgtttttgccttctccaagcctgaagctaccgctctccagcagtgcactg
cccagccaggccctgggtggggtcccctcggggctgaccatgcaaaacatgaacaacaga
cagatgcagagcagcatgttcggcaatagcggagcagcacaattcagggctatgctgcag
cagcagcagccagcagtgccgcctctcagctcctcccagcctagtgttcgcactcaagtg
cctcagtttctctcccctcaggttcaagcacagctcttgcagtttgcagcaaaaaacatt
ggtctgaaccctgcacttttaacttcgccaatgaaccctcagcacatgactctgttgaac
cagctctaccaactgcagctgtcgtaccagcgtttacaaatccagcagcagatgttgcag
gctcagcgcagcgtttccggtcccattagacaacaagagcagcaggttgcacgtacaatc
aataacatgcagcagcaaatccaacagcaccagcgacagctggcccacgcccttctcatg
aagcagcagcctccacctcatcccggcctgcaccctggcacaggaaaatcagccctggat
agctttccaccccacctccaggctccgggcctatctggcctgcagaccaaagagcagcag
tgttctccgaactccttttcctcccacccactctctggactgaatccaaacatgaatgta
aacagcatggaagtgggtagtggtctgtccatgaaggactcctctcagtctcagtcccgt
ctcccgcagtggacacaccccaattccatggagaacctctctggcacctcctctcccctg
gagcagagcctcagcaagcacggtgctatccctgcaggtcccagcatcggccccccaggg
aagtcccccatggatgactcctacatcccctacaatctaatccccagcagcgagtctcca
gccagtccactagtagccccagacaactggacacaggccaaatccgctaatgacaaaatc
tgcaatggcaccaacatcaactggccaccagagttctgtcctggcgtgccctggaaagga
ctgcagaatattgaccctgaaactgaccccaatgtaaccccaggaagtgttcccagtggc
cccaccatcaacaccaatattcaggatgtaaaccgctacctgctcagagacaggagtgga
ggtaaactatcagacatcaagtcgacctggtcccctggccccatctctcacccccaggcc
tccctgtcccatgagctctggaaggtgccacaaggcccccgaaacccttctgttcccaca
cgaccccccccagggctcaccaacaccaagccatcttccacctggggaggcaactcgctg
ggtttgacgccaggctggagcagctcctacacctccgggaccacctggagcactgacagc
tcagcaagaacgagcagctggctggttctgcgcaacctcaccccccagattgacggctcg
actctgcggacgctgtgcatgcaacacggccctctccttacattccacctgaacctgacc
caagggaacgccgtcgtccgctacagctccaaggaggaggcagccaaagcacagaaatcc
ttgcacatgtgcgttctgggtaacactaccatcctggcagagttcgctggggaggaggaa
gtgaaccgcttctttgcacagggtcaatccctgacccctaccaccagctggcaggcacac
ccgggcaccaatcagacgcggctcggcggggcggggacagggcactggaacagcggtggg
gggaaggggggcagcgagctgctgtggggaggggtcccccagttttccagtctctgggga
ccccctggaggggaggactccagggggatcgggagccccacccccatcaacacactgctt
ccgggagacttgctgagtggagagtccatgtag
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integrated database retrieval system
