Polyodon spathula (Mississippi paddlefish): 121295557
Help
Entry
121295557 CDS
T07273
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121295557
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
121295557
3'-5' decay
Other 3'-5' decay factors
121295557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
ResIII
UvrD-helicase
PAM2
zf_CCCH_4
PhoH
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_16
AAA_7
PIF1
Helicase_RecD
MOV-10_Ig-like
AAA_5
Motif
Other DBs
NCBI-GeneID:
121295557
NCBI-ProteinID:
XP_041076271
LinkDB
All DBs
Position
20:complement(30449019..30491731)
Genome browser
AA seq
1941 aa
AA seq
DB search
MLVMADRRPEKSCEQACESLRRQEYEAVVKHCTEALLSLSHCPPSPSAVSQQGSDFVRNR
VLLYRIAALLQLKNYEQADEDCKHVLAVELARGEGLFPAVLRCMLMEGSLQEISSILSRS
LLGEPLNGMVTNDLTRLRMLLSEIEMATSTMGSGYVEDNEEDVQEGWQFRPPPRGVTSSE
EYTICKRYLEQGICRYGAQCTSAHSQEELTEWQKRYASRLISLKQQQESAQSAGSYMEAL
IEKWMNSLSPEKVLSDYLEGVSVEHSPDLLVTVTTKKSSQSWTFSLFCKPARMLYRMALL
YDAHRPHFSIGAVSAGDGANQIVQEVPDNCQEWVGGSIAQNGLDHCVYEVVVRFSTEIFG
TFRQTIVFDFGFEPVLMQRVMVDAASIEDLEHLMQARQQLLITAKRWDSSCKTIVEFEPN
ETADLERSLLSRYQIPLSADQLFTQSVLDKSLTKENYQARLHDLLYIEEIAQYKEVSKFN
IKVNLQLVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNSVLLLPL
TKEKLAQAPGTKEKVYEAAIEDKTKDFIFLRVCKDCCEELKLRPDRELQVELQFQLNRAP
LCEMHYALDRIKDNSIMFPNASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLNF
QLPPVLIIGPYGTGKTFALAQAVKHILKQQDSKVLICTHSNSAADLYIKDYLHPHVEAGN
PHARPLRVYFRNRWVKTVHPIVQQYCLISSTQYAFQMPQKEDIVKHRVVVVTLSTLGELL
FTELETPGIFTHILLDEAAQAMECETIMPFALASNSTRIVLAGDHMQLSPFVYSEFARER
NLHVSLLDRLYEHYPAEYPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQPAHKDFY
PLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGVVTPYAD
QVFRIRAELRKKRMSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQMVED
STEDLDYGFLSNYKLLNTAITRSQSLVAVVGDPIALCSVGRCRKFWEQFIEICHENNSLH
GITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHHPATSNKQQQSPPKGKGQHQNP
SETFPAEGFVQPNPSVLIGNPIRAFTPPLGTHPTLGKSPSPVQRIDPHTGASILYVPAVY
GGNMVMSMPLSVPWPGYQGRFAVDPRLMTHQAAMAYNMNLLQAHSRGSPIPFGGSHPSPI
GMSQQEKEQEEQSRNGKMDGKPEQNRLHTPDRKAPDSKEKQVEPEAGHSRSPDPQASLNL
PNARLHRKENPAQRPLNFHLAPPNPPFPPHTSSRQFPHQYPVPRPPFRVHQQQQQAPQNH
LPLQPGQVHQLPQQHSSQLSPAFQAGHKPPFFNPLPHRGLHSPNLEAMAPEQPAMVPEEM
NNAVRPVPQLSAPQPPPAQPSRLNSFMEENSEAAALGEALDMQGVGTLEALSQQTRLHQW
NEHNHFLQSNMAFPLHQQLAHPLAQQALRFPQQLIRGNWRLGNNAEEEPGPGYPRYPGLL
REVPPSEQGEPRDLPEMPPPQSRLLQYRQVQQVQPRNPGTLPSPSSNSNHTGHFPGPYGD
TNRELEMINSQAFQQHQAQVFNPAFPVAAGHTTPPPVKYLLPEAQWPHPGLQQNHMLGQG
FHYGMQQLAHRQEQVHLMQMHHHHQQQQQHHQHTQHHQQQASNRESFHLLSPRTASSLHN
IEEYEPRGPGRPLYQRRISSSSVQAFPEDSGAAPGGLGQCKELLDHHSHLSYNYPSPELW
ASANSSVPFQNIPCNGASRVVPHRDLLASKVVRSAEEHMKAEGVQQLSSSFNYTTLQHLG
QFPPLMPSKQPSPEPCSSASGLQNPGMGKPPTMSYASALRAPPKPRPLPEQTKKSSDPLA
LLQELSIGSSTGSNGYYSYFK
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcatggcagacaggaggccagagaagtcatgtgaacaagcatgtgaatcgttg
cgaaggcaggagtacgaggcggtggtgaagcactgcacggaggcactgctgtccctcagc
cactgcccccccagccccagcgcagtgtcccagcagggcagtgacttcgtcaggaacagg
gtcctgctctacagaatcgcagcgcttttgcaacttaaaaattatgaacaggcagatgaa
gattgtaagcatgtgttggcagtggagctggctaggggggaaggcttgttccctgcagtg
cttcgctgcatgctcatggaaggaagtctccaagaaatatccagtattttatccaggtcg
cttctgggggaacctttgaatgggatggtgacgaatgatctgaccaggctcagaatgctg
ctgtctgaaatagaaatggcaaccagcacaatgggctcgggatatgtggaggataatgag
gaagatgtccaggagggctggcagtttcgccctcctccgcggggagtcaccagcagcgag
gagtacacaatctgtaaaaggtatttggaacagggcatttgcagatatggggctcagtgt
acgtctgcacattctcaggaagagctcacagaatggcagaagaggtatgcctcccgcctc
atcagcttgaaacagcagcaagagagcgcgcagtccgctgggagctacatggaagccctc
attgagaaatggatgaactccttatcgccagagaaagtgcttagtgattatttggaaggg
gtgagtgtggagcacagtcctgatctcttggtcacagtcaccaccaagaaatcgtcccag
tcctggaccttctcactcttctgtaagcctgcaagaatgctgtacagaatggctctcctg
tatgatgcccaccggccccacttttccatcggtgctgtttctgctggagacggtgctaac
cagattgtgcaggaagtgccagacaactgccaggagtgggttggaggcagcatcgcgcag
aatggactggaccattgtgtttatgaagtagtcgtccggtttagcacagagatcttcggg
accttccggcaaactatagtctttgactttggcttcgagcctgtgctgatgcagagagtt
atggttgatgctgcttcaatagaagatcttgaacatttgatgcaagcaaggcagcagctg
ctcatcactgcgaaacgctgggattcttcctgcaagacgatcgtggagtttgagccgaat
gaaaccgctgacctggagcgcagcctcctgagccgatatcagatcccactgtctgctgac
cagctcttcacccagtctgtgctggacaagagcctgaccaaggagaactaccaagcacgc
ctgcacgacctgctgtacatcgaggagatcgctcagtacaaggaagtcagcaagttcaac
atcaaggtgaatttgcagcttgtggcaagcttcatgctgacgggtgtctctggaggagcc
aagtacgcccagaatggacagctgtttggtcgcttcaagctcactgagacactttctgaa
gacactttggctggccgattggtgatgaccaaagtcaactctgttttgttactgccgctc
actaaagaaaaattggcacaggcgccaggaaccaaagagaaggtttatgaagctgcgatt
gaggacaaaacgaaggacttcatcttcctccgagtgtgtaaggactgctgtgaggagctg
aagctgcggccagaccgggagctgcaggtggagcttcagttccagctgaaccgcgctcct
ctctgtgaaatgcattatgcgctggacaggatcaaggacaacagcatcatgtttccaaat
gcaagcttgacgcccaccatcccctggagccccaacaggcagtgggatgagcagctggac
ccccggctcaatgcgaagcagaaggaggccatcctggccatcaccacccccctgaacttc
cagctgccccctgtgctcatcatcgggccctacgggacggggaagacgttcgctctggcc
caggcagtcaagcatattctcaagcagcaggactccaaagttcttatttgcacccattca
aacagtgctgctgacctgtacataaaggattaccttcacccacatgtagaagctggcaat
ccacacgccagacctctcagggtatatttcagaaaccgatgggttaagacagtccacccc
atagtccagcagtactgtttaatatcaagcacgcaatacgctttccagatgccacagaaa
gaagacatagtaaagcaccgggtggttgtcgtcactttgagcactcttggagaactgtta
ttcacagaacttgaaacgccaggtatctttacacacattctgttagatgaagctgctcaa
gccatggagtgcgagaccatcatgccatttgcgcttgccagtaacagcacgagaatcgtg
ttggcaggagaccacatgcagcttagtccctttgtgtacagtgaattcgccagagagagg
aaccttcatgtgtcgttgctggaccggctgtatgagcattaccctgccgaatacccctgc
agaatactgctgtgtgagaattatcgctcccatgaagctatcatcaattacacgtctgaa
ctgttctacgatgggaagctgatggccagtggtaaacagcctgcacataaagacttctac
ccgctaacgttcttcacagcaagaggagaggacgtgcaggagaagaacagcactgcctac
tacaacaacgcagaggtgttcgagatagtggagagagtggaggagctgcggaagaagtgg
ccggtagcctggggtaaactggatgaggggagcatcggtgtggtcactccatacgcagac
caggtgttccggattcgggcagaactgcgcaagaagagaatgtccgacgtcagcgttgaa
cgagtgttgaatgttcagggaaagcaattccgagtgctgttcctcagcacggtgaggacg
aggcacacctgcaaacacaagcagacggcaataaagaggaaagagcagatggtcgaggac
tccacggaggacctggactatggcttcctgtccaactacaagctgttgaacactgcgatc
acaaggtcccagtccctggtggctgtggtgggagatcccattgccctctgctctgttggg
agatgcaggaagttctgggagcagttcattgagatctgtcatgagaacaacagcctccac
ggcatcacatttgagcagatcaaggctcagctggaggcgctggagctgaagaagacctac
gtcctcaaccccctggctccggagttcatccccagggctctgaggcagcagcaccaccct
gcaacctccaacaagcagcagcagtctccaccaaagggtaaaggccagcaccagaatccg
agtgaaacatttccagcggaaggatttgttcagcccaatccatctgttttgattggaaac
ccaatccgagcattcacccctcccctcgggactcaccctaccctgggaaaatcacccagc
ccagtccagaggatagacccccacactggggcgagcatcctctacgtgccagctgtctat
ggaggaaacatggtcatgtcgatgcctttgtctgttccctggccggggtaccagggcagg
tttgcagtggaccctcgtctcatgactcaccaggctgccatggcgtacaacatgaacctg
ctgcaagcccacagccgtggatcccccatccccttcggagggagccacccctccccgatc
gggatgagccagcaggagaaggagcaggaagagcagagcaggaacggtaaaatggatgga
aaacctgagcaaaacaggctgcacaccccagacaggaaagcccctgattccaaagaaaaa
caggtggaacctgaggctggacatagcagaagccctgacccccaagcaagcctaaattta
ccaaatgccagactccacaggaaagaaaacccagcccagaggccgcttaacttccacctg
gctccccccaacccccctttcccccctcacacctccagtcggcagttcccacaccagtac
cctgtcccccggcccccgttcagagtccaccagcagcagcagcaggcccctcagaatcac
ttgcccctgcaacctggccaggtgcaccagctgccccagcagcattcatcccagctctct
ccagccttccaggccggtcacaaaccccccttcttcaaccccctccctcaccggggcttg
cactccccgaaccttgaggccatggctccggagcagcccgccatggtgccggaggagatg
aataatgcggtgaggcccgttccacagctcagcgcaccacagccgccgccagctcagccc
agccggctcaacagcttcatggaagaaaactctgaggcggcagccctgggagaagcgcta
gacatgcagggggtcggcacgctggaagctctgagtcagcagacgagactgcaccagtgg
aatgaacacaatcactttctgcagagcaacatggccttccctctgcatcagcagctggct
catcccctagcccagcaggccctgcgcttcccccagcagctcatcagaggcaactggagg
ctgggcaacaatgcagaggaggagcctgggccaggataccccaggtaccccggtctgctc
agagaggttcctccttcggagcagggtgagccacgggacctgccggagatgccccctccc
cagtctcgcttgctgcagtacaggcaggtccagcaggtccagccccgcaaccctggaacc
ctcccctccccttcgtccaactcaaatcacaccggccacttcccaggcccctacggagac
accaaccgggagcttgagatgatcaacagccaagcttttcagcagcaccaagcccaggtg
ttcaaccctgccttccccgtggcggccggacacaccacccctcctccagtgaagtacctg
ctccctgaggctcagtggccgcaccctggcctgcagcagaaccacatgctggggcagggc
ttccactacggcatgcagcagttagcccacagacaggagcaggtccacctgatgcagatg
caccatcaccaccagcagcagcagcagcaccatcagcatactcagcatcaccaacagcag
gccagcaatcgggaatcatttcacctgctctcaccccgaacagcttcttcacttcacaac
atagaagagtatgaacctagaggaccaggcaggccactgtaccaaagaaggatctcttct
agttctgtgcaggcgttccctgaagattcaggcgctgctccaggtggcctcggtcagtgt
aaggagcttctggaccatcatagccatctctcatacaactacccatccccagagctgtgg
gccagcgccaactcctctgtgccatttcagaacattccatgcaatggagccagcagagta
gttccgcacagggaccttttagcttcaaaggtagtccgttctgcagaggagcacatgaag
gctgaaggtgtgcagcagctgtcgagttcgttcaattacaccacgctgcagcacctcggc
cagttccccccgctcatgcccagcaagcagccaagtcctgaaccgtgcagcagcgccagc
gggctgcagaaccctggcatgggcaaaccccccaccatgtcgtatgctagcgccctgcgg
gcaccccccaaaccaagacccctgcccgagcagacgaaaaagagcagtgatcccctggcc
ctgttacaggagctcagcataggcagctcaacaggtagcaatggatattattcttatttc
aaataa
DBGET
integrated database retrieval system
