Polyodon spathula (Mississippi paddlefish): 121295575
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Entry
121295575 CDS
T07273
Symbol
zgc:163098
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein
KO
K12842
U2-associated protein SR140
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121295575 (zgc:163098)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121295575 (zgc:163098)
Spliceosome [BR:
pspa03041
]
Complex A
U2 snRNP components
U2 related factors
121295575 (zgc:163098)
Complex B
121295575 (zgc:163098)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Surp
RRM_1
CID
cwf21
CTK3
RRM_7
SET_assoc
Motif
Other DBs
NCBI-GeneID:
121295575
NCBI-ProteinID:
XP_041076311
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All DBs
Position
20:16395146..16445532
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AA seq
922 aa
AA seq
DB search
MADRKLKAIGTKRTLSKKEQDELKKKEEEEKAAEVFEEFLASFDGSDDSTVKTFVRGGIV
NATKEEEAAEIKKNKLYRPATKLTPVQQNNVLSTPSCDSKKPFIKKKTEEKKKSNLELFK
EELKQIQEEREERYKRKKFTSEPGSYGDMEMQPPRRSLFDDDLGDPHTTNLYIGSINPKM
NEEMLCKEFGKFGPLASVKIMWPRTDEERTRVKNRGFVAFMTRKDAERALQALDGKVVMG
FEMKLGWGKAVRIPPHPLYVPPGVLKLTTPPPPSGLPFNAQPRERFRNQDAPKPPITRSK
EEFDKTLSEAVVKVVIPTERNLLGLIHRMIEFVVREGPMFEAIIMNKEKTNPDFRFLFEN
KSQEHVYYRWKLFSILQGDPPNEWRTADFRMFRGGSIWRPPLLNPYLHGEEEVKDESTSP
SLQEEELKKGQLKAEHRDKLENILRGLSPHKDDVGDAMVFCLEKAEAAEEVVGCIAESLS
ILQTPLKKKIARLYLVSDILYNSCAKVTNASYYRKYFEVKLPQMFDDIGEAYKNIQARLQ
AEQFKQKVMACFRAWEDWAVYPEPYLIQLQNIFLGLVKTGEERVERSMTPDLDGAPLEDV
DGVPLENVDGSPLRGMPWDTTSLDGAPVDDIDGVPLASAIDDIDGMPLHDAVCTKEKNSL
PLAKVALSKWEVIDNSEVMAHASTGSKWDLLDNQDSEEESKNLMEEVKEEVEESEEDSSD
SEPSTPQKDELPDTKTLQSLFDLSEGKRAKLRELELKVVKFQDELESGKRPRKSGLTVQQ
QVEHYRNKLLQKECEKDEQERREKTSQKSKDRNKKEEKKDKDRLEERSKNKEKDRRRSKE
SNHERERNRGRSRDKEREKEDEKMRDRSDRRGGGSYSSPAKTKSRSPKKSKRSRSPSPGR
RLWRSSSRSPHRSHKKSKKSKH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcgcaagctaaaagccattggcactaaaaggacattaagtaaaaaggaacaa
gatgaacttaagaaaaaggaggaagaagagaaagcagcagaagtgtttgaagaattttta
gcatcctttgatggtagtgatgacagcactgtgaagacctttgtgcgagggggcattgta
aatgcaacaaaagaggaggaggctgcagaaattaagaagaacaaactataccggccagcg
acgaaattgactccagtgcagcagaataatgttttatcaacaccatcttgtgactcaaag
aaaccttttataaagaagaaaacggaagaaaaaaagaaaagtaacctggaactgtttaaa
gaggaactcaaacagatacaggaggagcgtgaagagcgatacaaaagaaaaaaatttaca
tccgaacccggcagctatggagacatggaaatgcagccccctcgacggtcattgtttgat
gatgatttaggagacccacacacaaccaatttgtatatcggaagcatcaacccaaagatg
aatgaagaaatgctttgtaaggagtttggcaagtttgggccattggcaagcgtgaagatt
atgtggccacggactgacgaggagagaacaagggttaaaaatcgtggatttgtagctttt
atgacccgaaaagatgcagaaagagcactacaggcactggatggcaaggtggtaatgggc
tttgaaatgaagctgggctggggaaaggcagtccgaatccccccgcaccctttgtacgtt
cctcctggtgtgctgaaactaactacacccccccctccatctgggttaccctttaatgca
cagcctcgagagaggttcagaaatcaagacgcaccaaaaccaccgattactagatccaag
gaagaatttgacaagactctgtccgaagccgtagtcaaagtggttatcccaacagaaagg
aacctattaggacttatccacagaatgattgaatttgtggtgcgtgaaggacccatgttt
gaggctataatcatgaacaaggaaaagaccaatccagacttcagattcctatttgaaaac
aagagccaggagcatgtgtattaccgttggaagcttttctcaattcttcagggtgaccca
ccgaatgaatggagaacagcagacttccgaatgtttcgtggagggtctatatggcggcct
ccgcttttaaatccttatcttcatggagaggaggaggtgaaagacgagtccacatctcct
tcgctgcaggaggaagagctgaaaaagggccagctaaaggcagaacaccgagataagctt
gaaaacatattgcgagggctgagccctcataaggacgacgtaggagatgccatggtgttc
tgtttggagaaggctgaggcagcagaggaggtagtggggtgcattgcagaatcgctgtcc
atcttacagaccccgctgaagaaaaagattgcaagactgtatttggtttcggacattttg
tacaactcttgtgccaaagttacaaatgcatcctactatagaaaatactttgaggtaaaa
ctccctcaaatgtttgatgatattggtgaggcatacaaaaacatacaggcaagacttcaa
gcagagcagttcaagcaaaaggtgatggcttgcttcagagcgtgggaggactgggctgtc
tatccagagccttatcttattcagttgcagaatatttttctgggactagtgaagactgga
gaagagagagtggaaagatctatgactcctgatttggatggtgctcctctggaagacgtg
gacggggttcctctggagaatgtagacggctctccgctgcggggaatgccctgggacaca
acctccctggacggagcccccgtcgatgacattgacggagttccactcgcttcagctata
gacgacatcgatgggatgcctttacacgatgcagtttgcactaaagagaaaaactcgctt
ccacttgccaaggtagctctgtcaaagtgggaggtgattgacaactccgaggtcatggca
catgcaagtacaggatcaaaatgggacctgcttgataatcaagattcagaagaagaatcg
aaaaatctcatggaggaggtgaaggaggaggtggaggagtcggaggaggacagcagtgac
tcggagccctcaactccacagaaagatgagctgcctgacaccaaaaccctgcagagccta
tttgacttgtctgaggggaagcgagccaaactacgagaactcgagttgaaagttgtgaaa
ttccaggatgaacttgagtcaggaaaaagacccaggaaatcaggactgacggttcagcag
caggtggagcactacaggaataaactcttacagaaggagtgtgaaaaagatgagcaggaa
aggagagaaaagacatcccagaagtcaaaagacagaaacaagaaagaagagaagaaagac
aaagaccgcctggaagaaaggagcaaaaacaaggagaaggacaggaggcggagtaaagag
tctaatcacgagcgagaaaggaacagggggagaagccgagataaagaacgagagaaagag
gatgagaagatgagggatcggtcagacagacgaggaggaggcagctactcgtcacctgca
aaaacgaaatcaaggtcacctaagaagtccaagcggtcccgctccccgtctcctggcaga
aggttgtggaggtcaagctctcgatcacctcaccgctcccacaaaaaatccaagaagagt
aagcactga
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