Polyodon spathula (Mississippi paddlefish): 121295644
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Entry
121295644 CDS
T07273
Name
(RefSeq) cholesterol transporter ABCA5-like isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121295644
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121295644
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
121295644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
RH1
Motif
Other DBs
NCBI-GeneID:
121295644
NCBI-ProteinID:
XP_041076497
LinkDB
All DBs
Position
20:28155410..28172588
Genome browser
AA seq
1660 aa
AA seq
DB search
MLPVKGRDAGVWQQTKGLLYKNLLIKWRTKQQSLQELILPLLLLGLLILISTLHPHVYYH
GISTVELERQYSYDPEPKYLGYTPNNTVTNHIMDKVAEHLTNEGIEVEMFHSEKALENAS
LHDQSSWVGVVFQSSLSYQLRFPYSSVPLPSDYTDSIASCFTDSKSCKAANYWYSGFTKL
QSYIDAAIIEVQTQREVWREMKGLRVVMMGQPGSVEVQKFPHALISIYLVLAFTPFVSFL
IVNVAAEKECRLKDAMAMMGLRDSAFWLSWGLLYAALVSTMSVLMAIISTCTSLFPSSSF
FVIFLLIFLYGISTIFFSFMLTPLFKKPKFASTVGSMLTVVFGCLSLFTVLMKDFPQPLV
WVLCLLSPSAFSIGIAQVVYLEAQGDGAVFSTLSNGPHPLFVPLVMLVLDSFLYLLLAVY
LDQVLPREYGIRRSLLYFLKPSYWSRHMKHYKEVSSRFESEVNGGPPSSESVEPVSSEFQ
GKEAIRINNIHKVYKEKDSSVEALRGLTFDIYEGQITALLGHSGAGKSTLMNILCGICPP
TKGSAMIYGSPVSEIAEGLEMQRLVGICPQFNIMFEVLTVEEHLRIFAAIKGIPPGDINR
EVAKVLKDLDLEKIMDAQAKNLSGGQKRKLSVGIAILGDPKILLLDEPTAGMDPCSRHQV
WSVLKSRRSDHVTVLSTHYMDEADILADRKAVISQGLLKCIGSSLYLKTKCGVGYHLRMS
VNESCDTDHVTSLIKQHVSKAQLSRQQEAELTYTLPFENMDTFSGLFSELDSQPNLGIGN
YGVSMTTLEDVFLKLEAEAEVDQADYSVFNQEQVEAEGDASSLDDTDQQLLVFSDSKSEG
VSGHALWRQQFRTVARLHLLNLQRERKPIILALFVIFLASVLALSLISGNIRINATSRRL
SPDLYLLSSKQPLSKYASSLLLHNATDSSIDDFIQNLESQDIKVELQIGNDFMATSPHSA
AFNISGSSKQHYEYTAVFNSTKVHSLPMLLNILSNALLRSLNGTGRIETWSKPFEFKIPE
ALSNALIYIEAVLLGMLAAGMPAYFAMEHTRDREIKCRSQLRISGLVPSAYWCGQAAVDI
PFYYLILIAMTSTLFAFHSEELLHAGAYTSVIPCLTGYGPAMILFTYVVSFMFTRVQNNR
DFLSVVSMLVCVVSAFLVQLTYVNENQIVATILHNCLCFFNPLYPLMGCLNCITKKTFTD
MSVYEDTGTLSRNMLVTIVSPYLQCIFLLFLLRWLEIRYGGKTMKNDPLCRISSGKTKAQ
RNPEESENEDEDVQAERARVKEALSCQSCEEKPVVVVSSLRKEYSAHHDGFILNTKKKKV
ATKNISLCVRKGEVLGLLGPNGAGKTTTMYMLAGETEPTAGQVLMGDYCTEFRQVDSPLE
YIGYCPQVNPLWPKITLQEHLEIYASIKGLGQNEVAGIIKRVVNALELKEHLQKKAKNLS
AGIKRKLCFALSMLGNPQIVLLDEPSTGMDPKAKQRMWRAIRAAFKNRQRGAILTTHYME
EAEAVCDRVAIMVSGQLRCIGSIQHLKGKYGRGYSLEVKLQEEMTGLQQVDPLHKEILRI
FPHAVRQESFATLMVYKIPMEDVKSLSQSFSQLEKAKDSFHFEEYNFSQATLEQVFLEFA
KEQENDEEEIGSLSTTFQWQRLQQDELVSTPHSDSIVHQL
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgttaccagtaaaaggaagagatgccggggtctggcagcaaacaaaaggcctgctgtac
aaaaacttgcttatcaaatggaggaccaaacagcagagtctgcaggagctgatcctgcct
ctgctgttgctggggctcctgattctcatcagcacactgcacccccacgtctattaccac
ggcatctccaccgtggagctggagcgccaatacagctatgacccggagccaaaatacctg
ggatacacgcccaacaatactgttaccaatcacattatggacaaggtggcagaacattta
actaacgaagggattgaggtggagatgttccacagtgagaaggccttggagaatgccagc
ctgcacgatcagtcatcctgggtgggtgtggtgttccagagctctttaagctaccagctg
cgctttccctacagttctgtgccactgcccagcgactacacagactcaatcgccagctgc
tttacagacagtaaatcgtgcaaggctgcaaactactggtactcaggattcaccaaactc
cagtcatacattgatgcagccatcatagaggtgcagacccagcgggaggtctggagggaa
atgaaagggctacgagtcgtgatgatgggccagcccgggtcagtggaggtccagaagttc
cctcacgcgctcatctccatctacctggtcctggcgttcacgcccttcgtgtccttcctc
atcgtcaacgtggcggcggagaaggagtgccgcctgaaggatgccatggccatgatgggt
ctgcgcgactctgctttctggctgtcctggggcttgctgtatgctgccctagtctccacc
atgtcagttctcatggcaatcatctccacatgcacctccctctttcccagcagcagcttc
tttgtgatctttctgctcatttttctgtatgggatatccacaatcttcttttccttcatg
ctgacacccctcttcaagaagcccaagttcgccagcactgtgggctccatgctgacagta
gtgtttggctgcctgtctctcttcactgtcctgatgaaggatttccctcagccgctggtc
tgggtgctgtgcctgctgtctcccagtgccttctccattggcattgcacaggtggtgtac
ctggaagctcagggagatggagcagtcttctccactctgtccaatggcccccaccccctt
ttcgtgccccttgtcatgctggtgcttgacagcttcctttacctcctgctagcagtctac
ctggaccaggtcttaccaagggaatatggaatacgtcggtccctcctctactttctgaag
ccgtcctattggtccagacacatgaagcactataaagaggtcagttcgcggtttgagagt
gaggtaaacggcggccctccatccagcgagtcagtcgagcccgtgtcttcagagttccag
gggaaggaagccatcagaattaacaatattcataaagtttataaggagaaggacagctct
gttgaggcacttagaggcttgacgtttgacatctatgagggtcagatcacagccctgctg
ggtcacagtggagcagggaagtccacgctgatgaatattctgtgtgggatctgccctccc
actaaaggctctgccatgatctatggctccccagtgtctgagattgcagaggggctggag
atgcagaggctggtgggaatctgcccgcagttcaacatcatgttcgaggtgctgactgtg
gaggagcacctgaggatctttgctgccatcaagggcatccccccgggcgacatcaataga
gaggtggccaaagtgttgaaggacttggatctggagaagatcatggacgcccaggccaag
aacctgagcggcggccagaagaggaagctgtctgtgggcattgccatcctgggggacccc
aagattcttctcctggacgagccaacggcaggaatggacccctgctcccggcaccaggtg
tggtctgtgctgaagagccgtcggtcggatcatgttactgtactctccacccactacatg
gacgaagctgacatcctggcagatcgtaaagctgtgatctcccaaggactcctcaagtgt
attggctcctctctctatctcaaaactaaatgtggggtcggctatcacctccgaatgtca
gtgaatgagtcatgtgacacagaccacgtgacctcattgatcaaacagcatgtctctaaa
gcacagttgtcacggcagcaggaggcggaactgacatacactcttccctttgaaaacatg
gacactttttcaggcctgttctcagagctggacagccagcctaatcttggaataggaaac
tatggtgtttccatgacaacactggaagatgttttcctgaagctggaggctgaggccgag
gtcgatcaagcagactacagcgtgtttaaccaggagcaggtggaggcggaaggggacgcc
tcctctctggacgacactgaccagcagctccttgtcttctctgacagcaagtctgagggt
gtctctgggcacgctctgtggaggcagcagttccgcaccgtagccagactgcacctgctc
aatctgcagagggagaggaagcccataattctggctctgttcgtcatcttcctggcctca
gtgctggctctgtccctgatcagtggcaatatccgaatcaacgctacgtcccgtcggctc
tccccagacctctacctcctcagcagcaaacagccgctttccaagtacgcgagcagcctg
ctgctgcacaatgccaccgactcgagtattgatgacttcatccaaaatctggaatcacag
gatattaaggtggaactgcagataggaaatgatttcatggcaacttccccacatagtgcc
gcctttaacatttcaggttccagtaagcagcactacgagtacacagctgtgtttaacagc
accaaggtacactcccttcctatgctgctgaatatcctgagcaacgctctgctgcgcagc
ctcaacgggaccggccgcatcgagacgtggagcaaaccctttgaatttaaaattcctgag
gctctatcgaacgccctgatctacattgaagcggttctgcttggaatgctggcagcagga
atgccagcctactttgccatggaacacacacgggaccgtgagattaagtgccgttcccag
ctgcgaatctcaggcttggtcccgtctgcttattggtgcggtcaggcagctgtcgacatc
cccttctactacctcatcctgatcgccatgaccagcactctcttcgccttccactcggag
gagctgctgcacgctggcgcatacacctcggtgatcccgtgtctgacaggctacggtccg
gcgatgatcctcttcacctacgtggtgtccttcatgttcactcgcgtccagaacaaccgg
gatttcctctccgtcgtctccatgttggtctgtgtagtatctgctttcctggttcagctg
acctatgtgaatgaaaaccagatcgtagccacaattctgcacaactgtttgtgctttttc
aacccactgtacccacttatgggctgcctcaactgcatcaccaagaagacttttactgac
atgagcgtttatgaagacactggaacactgagtagaaacatgctggtaaccattgtttcg
ccctacctgcagtgcatctttcttctcttcctgctgcgctggctggagatccgatacgga
ggcaagaccatgaagaatgatccgctgtgcaggatctcctctgggaagacgaaagcacag
aggaaccctgaagagtccgagaacgaggacgaggatgtccaagcagagagggcgagggtc
aaggaggcactgagctgtcaaagctgcgaggagaaaccagtggtggtggtgagcagccta
aggaaggagtacagcgcccatcatgacggtttcatcttgaacaccaagaagaagaaagtg
gcgactaaaaatatctccctgtgcgttcggaaaggggaagtgctgggtctgctgggtccg
aacggagcagggaagaccactaccatgtacatgctggctggagaaactgagcccacagca
ggacaggtgctgatgggcgattactgcacagagttccgccaggtggacagccccctggag
tacatcggctactgtccgcaggtgaacccgctgtggcccaagatcaccctgcaggaacac
ctggagatctacgcctctatcaaggggctcggccagaatgaggttgccggcatcatcaag
cgtgttgtgaatgcactggagttgaaggaacaccttcaaaagaaagccaagaatctctcg
gcaggaattaagagaaagctgtgttttgccttgagcatgctgggtaacccacagattgtg
cttctggatgaaccttcaacaggaatggaccccaaagccaagcagaggatgtggagagct
atccgtgcagcattcaagaaccgacagcggggggcgatactcaccacccactacatggag
gaggccgaggctgtttgtgaccgagtcgccatcatggtgtcagggcagttgcggtgtatt
ggctccatccagcacctgaagggaaagtacggccgtgggtacagcctggaggtgaagctg
caggaggagatgacagggctgcagcaggttgatccccttcacaaggagatcctgagaatc
ttccctcatgcagtgcggcaagagagctttgccactctgatggtgtataagatccccatg
gaagatgtgaagtcactatcacagtccttttcacagttggaaaaggcaaaagattccttc
cattttgaggagtacaacttttctcaggctacactggaacaggtgttcttggagtttgct
aaagagcaggagaatgacgaggaagagattgggtccctgagcacaacgtttcaatggcag
agacttcagcaagatgagctggtgtcaacgccccactcggacagcattgtccaccagctt
taa
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