Polyodon spathula (Mississippi paddlefish): 121295690
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Entry
121295690 CDS
T07273
Name
(RefSeq) cullin-4B-like
KO
K10609
cullin 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121295690
09124 Replication and repair
03420 Nucleotide excision repair
121295690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121295690
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121295690
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121295690
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
121295690
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121295690
TCR (transcription coupled repair) factors
Cul4-CSA complex
121295690
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121295690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
Motif
Other DBs
NCBI-GeneID:
121295690
NCBI-ProteinID:
XP_041076590
LinkDB
All DBs
Position
20:complement(4621978..4635634)
Genome browser
AA seq
861 aa
AA seq
DB search
MFPTGLSSPNPPPPAQEVRPAASDGNNSGSSISTTSKKRKINSSEREEFESIPSSPSKSI
NNTSSAGSSTSHHVQKKLRFEDSVDFIGLDVKMAEESSSSSSTSSNKSKNLFFAAGVGHH
ANGLTKTSTGSTSFSNSKPGAAKKLVIKNFKEKPKLPENYTDETWQKLKEAVEAIQNSTS
IKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIHQFREDALDSVLFLKKIDTC
WQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDQKVQNKTIDGILL
LIERERSGEAIGRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEHEVPD
YLHHVSKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLNHLLDENRIQD
LSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHVIDI
CFLKNEKFVNAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMI
IFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDM
ELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVKLQEIFKTFY
LGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKLATG
IEDGELRRTLQSLACGKARVISKSPKSKDVEDGDKFTCNDDFKHKLFRIKINQIQMKETV
EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIES
LIDRDYMERDKENPNQYNYVA
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaacaggtttatcttcccctaaccccccgccgccagctcaggaggtcagacca
gcagcttctgatggtaataacagtggcagcagcattagtactacgtccaaaaagaggaaa
ataaacagctccgaaagggaagagtttgaatcgattccctcgtctccttccaaaagcatt
aacaatacgtcctccgctggttcgtccacctctcaccacgtccagaagaagttgaggttc
gaggactctgtcgattttatcggactggatgtgaaaatggctgaggagtcctcttcttct
tcatcaacgtcttctaacaagagtaaaaacctctttttcgctgctggcgttggacatcat
gccaatgggctgacaaaaacttcgactgggtccacaagcttctccaacagcaaacccgga
gctgccaagaaactagttataaaaaacttcaaagagaaaccgaaattgccagagaattac
actgacgagacctggcagaaactgaaggaggcggtggaggccattcaaaacagcacttca
ataaaatacaatctggaggagctttatcaagctgttgagaacctctgttcccacaaaatt
tcagcaaaactttataagcagctgagggcggtgtgcgaggaccacatcaaggctcagatc
catcagttcagagaggatgcattagacagcgtgctgttcctgaagaagatagatacatgc
tggcaggatcactgcagacaaatgatcatgattcgaagtatcttcttgtttttggatcgg
acttatgttcttcaaaattcaatgctgccatctatttgggacatgggactggagctgttt
agattttacataatcagtgatcagaaagtgcagaataagacgatagacggaatcttgctg
ttgattgaaagggagcgaagtggagaggccatcggcaggagtttgctccgaagtcttctc
agcatgctctcagatttgcagatttaccaggattcatttgaacagcggtttttggaagag
actaatcgtttgtatgctgccgaaggtcagaggctaatgcaggaacacgaggtcccagac
tatctgcaccatgtaagcaagcgcttggaagaggaagctgacagggttatcacgtattta
gaccagagcactcaaaagcctcttatagctactgtggaaaaacagctattaggtgaacat
ctaacagctactcttcagaaaggtctaaaccaccttctagatgagaacagaatccaggac
ctgtcccttttgtaccagctcttcagcagggtgcgagggggtgtgcaggtcctccttcaa
cactggattgagtatataaaggcctttggaagcacgatagtaatcaaccctgaaaaggat
aagacaatggtccaggagctgctagattttaaggacaaggtggatcacgtcatagacatc
tgcttcttgaagaatgagaagtttgtcaacgccatgaaggaagcttttgaaacgttcata
aacaagaggccaaacaagccagcagaactcattgcaaagtatgtggattcaaagctgcgt
gctggcaacaaagaagcaacggatgaggagctggagaagatgttggacaaaataatgatc
atattcaggttcatttatggaaaagatgtgtttgaggcattttacaagaaagatttagca
aagaggttactggttgggaagagtgcttcagtagatgctgagaagtccatgctgtccaaa
ctaaaacacgaatgtggcgctgctttcactagtaaattggaggggatgttcaaggacatg
gagctttcgaaagacatcatggttcagtttaaacagtacatgcagtgtcaaaacatacct
ggtaatattgaactgacagtaaatatcctaacaatgggttactggccaacatacgtgcct
atggaagttcatctacctgcagagatggtaaaactgcaggagattttcaaaacgttttac
ctggggaagcacagcggcaggaagctccagtggcaatcaacactaggacactgtgtatta
aaagctgaatttaaagagggtaaaaaggagctgcaagtgtcacttttccagactttggtg
ttgctcatgttcaacgaaggagaagagttcagcttggaagaaatcaaactggcaacagga
atagaggacggtgaactgaggcgaactctgcagtccctggcctgtggcaaggccagagtc
atttccaagagcccgaagagcaaagacgtggaggacggagacaagtttacctgcaatgac
gacttcaaacacaaactcttcaggataaagatcaatcagatccagatgaaagaaacggtg
gaagaacaagccagcactacagagcgagtgtttcaggacaggcagtaccagatcgacgcg
gccatcgtccgaataatgaagatgaggaagacactcagccataacctcttggtgtcggag
gtctacaaccagctcaaattccccgtcaagcctgctgacctgaagaagagaatagagtca
ctaattgaccgggactatatggagcgtgacaaagagaaccccaaccagtataactatgtg
gcatag
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