Polyodon spathula (Mississippi paddlefish): 121295724
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Entry
121295724 CDS
T07273
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121295724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121295724
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121295724
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121295724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
ANCHR-like_BBOX
zf-B_box
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121295724
NCBI-ProteinID:
XP_041076651
LinkDB
All DBs
Position
20:complement(29843884..29851169)
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AA seq
647 aa
AA seq
DB search
MDSIHALKIGADKMGGQPSSLSSLEEELTCSICLSIFNNPVTTPCGHNFCLSCLDLTWND
DVALGYSCPQCRTHFYAKPTLHKNTVLSTVVDTVSKSLKGKSQDETKGAALDSTVIFCDT
CMVSKASKTCLTCMVSYCDSHLRPHIENPVFHGHQLTEPLPDLQQRICKEHHKTLEFFCK
DHNKCICGACLHSHLTCKFTSLDCEIAEKEKNYKEKLVTLRRQIEKTKMVVFEMKGQQSS
LRDSVANSKAALEVEYRVMKDLIEKDEREAMNLLEREEQSAQTRIQSLMLKMTKNIEEMS
SCKDQIESVLAQGQRITVLQCTIEMPQSVTFTPHVPGVNMNSKQLKMYKSSAVSLKKYLT
DVLSLPVEKRVQMLNAVPAPDKKVEKKTGKPDSTVAVSLDEPLLTLATDQIVGVASDDNR
PKKPGDGNKKSSKPPKPPKLRDPPKNTSCVPKVVKPVNPTEVTNRHNLLQDAAVLMLDAT
TAHKRIAISENFTKASVSEEMMSYPDSPARFTVCSQVLCSKGFSKGRHYWEVKLTSSNFC
AIGVASSSIERKGPTSKLGRNKESWCIEWFNVKLSAWHDQRETVLENPSSSRVGVLLDCD
GGSLTFYSISDRVYPIYTFSCRFSEAVYPAFWLFSSGTAVSLCKLTA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggactctattcacgcattgaaaattggcgctgacaagatgggaggccagccgtcgtct
ttgagcagtctggaggaagagctgacgtgttccatctgcctgagcattttcaacaacccg
gtgaccacaccgtgtggacacaacttctgcctgagctgtctggacctcacctggaacgac
gacgtggctctaggctacagctgccctcagtgcaggacacatttctacgccaaacccacc
ctgcacaaaaacaccgtgctgagcactgtggtggacacagtcagcaagtcactgaaaggc
aagagccaggacgaaacgaagggagcggctttggattcgactgtaatattctgcgacacc
tgcatggtctccaaagcctccaagacttgtctgacgtgcatggtctcctactgcgactcc
cacctcagaccgcacatcgagaatccagtctttcacggccaccagttgaccgaacccctg
cctgacctgcagcagcgcatctgcaaagagcatcacaagacgctggagtttttctgcaag
gaccacaacaagtgcatctgtggagcttgcctgcactcccacttaacctgcaagtttact
tcactcgattgcgagatcgccgagaaggaaaaaaattataaagaaaaactggttacactg
aggagacagattgagaaaacaaagatggtcgtttttgagatgaagggacagcagtcgtct
ctcagagattcagtggcaaacagcaaggctgcgcttgaggtggagtaccgcgtgatgaaa
gacctcattgaaaaggacgagagggaggcaatgaacctgctcgaacgagaagagcagagt
gcccaaacccggatccagagcctcatgctcaaaatgacaaaaaacattgaggagatgagc
agctgcaaagaccagattgaaagcgtgctggctcaggggcagcgaatcacagttctacag
tgtacaatagagatgccacaatctgtgacatttactcctcatgttcccggagtcaatatg
aattcaaagcaactgaaaatgtacaaatcgagcgcagtgtctctcaagaaatacctcaca
gacgtattgagcctgccagtggagaagagagtccaaatgctgaatgcagttccagcacca
gacaaaaaggtggagaagaaaacaggaaaacctgacagcacggttgccgtgtccttggat
gagccattactaactttagccacagatcagattgttggtgtagccagtgacgacaaccgc
ccaaagaagccaggggatgggaacaagaagagcagtaaacctcccaaaccaccaaagctc
agggatccacctaaaaataccagttgtgtgccaaaggtcgtcaaaccagtcaatcctaca
gaagtgactaatagacacaatcttctgcaagatgctgccgtccttatgctagatgccact
acagcacacaaaagaatcgccatctcagaaaatttcaccaaagcgtcagtctccgaagag
atgatgtcatacccggacagcccagcgagattcacggtctgctcccaggttctgtgctcc
aaaggattctccaaggggcgtcactactgggaggtgaagttaaccagcagcaacttctgt
gccatcggcgtggcctccagcagcatcgagcgcaaggggccgaccagcaagctggggagg
aacaaggagtcgtggtgcatagagtggttcaacgtgaagctgtccgcttggcacgaccag
cgtgagacagtcctggagaaccccagctccagcagagtcggggtgctcctggattgtgat
gggggctctctcaccttctacagcatctcagacagagtgtaccccatttacacgttctca
tgtcgcttttcagaggctgtctatccggctttctggctcttctccagcggcactgcagtg
tctctgtgcaaactgactgcctaa
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