Polyodon spathula (Mississippi paddlefish): 121295808
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Entry
121295808 CDS
T07273
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121295808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121295808
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121295808
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121295808
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121295808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_3
zf-CCHC
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
121295808
NCBI-ProteinID:
XP_041076802
LinkDB
All DBs
Position
20:complement(27830995..27836061)
Genome browser
AA seq
274 aa
AA seq
DB search
MQDLIAGVQKIRFDLEVDVLIQKGARPLPFPGMDKSGSAVCEFFSRGLCKRGAMCPFRHL
RGEKSIVCKHWLRGLCKKGDQCEFLHEYDMSRMPECFFYSKFSECSNRECPFLHIDPASK
VRDCPWYDRGFCKHGPLCKHRHTRRVICPNYSVGFCPNGAHCKFVHPKADLPTCPPEQHK
HSSQPMKLAPAPLMVDMALLARQQNLLLQEVTPFPHLSTTMSIVHYQLSRLQEAGTSTRG
SARPIHLVTCYKCGEKGHYANKCGRRNLGLLAGH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatctcatagctggagtccagaagattcggttcgatctggaagtggacgtgctt
atccagaaaggggcccgaccgctcccgttcccgggaatggacaagtctggctcagcagtg
tgtgagttcttcagcaggggactctgtaaaagaggagccatgtgcccgttccgtcacctg
cgtggagagaagtccatcgtgtgcaagcactggctgcgcgggctgtgcaagaagggggac
cagtgcgagttcctgcatgagtacgacatgagcagaatgccagagtgcttcttctactcc
aaattcagcgagtgcagtaacagggagtgcccgtttcttcacatcgaccctgccagtaag
gtcagggactgcccctggtatgacaggggcttctgtaagcacggtcccctctgcaaacac
aggcacaccaggagagtgatctgccccaattattcagtggggttctgcccaaacggagcc
cactgcaagtttgtccatcccaaagcagatttgccgacatgccccccggagcagcacaag
cattccagccagcctatgaagctggctccagccccgctgatggttgacatggcactcctg
gccaggcagcagaacctgctgctgcaggaggtcactcccttcccacacctctccaccacc
atgagcatcgtacactaccagctgagccggctgcaggaggcgggcacgtcgacacggggc
tctgcccggcccatccatctcgtcacctgctacaagtgtggagagaagggtcactacgcc
aacaagtgtggaaggagaaacctggggctgctggctgggcactga
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integrated database retrieval system
