Polyodon spathula (Mississippi paddlefish): 121295856
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Entry
121295856 CDS
T07273
Name
(RefSeq) TBC1 domain family member 8B-like
KO
K19951
TBC1 domain family member 8/9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121295856
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121295856
Endosome - Golgi transport
Rab GTPases and associated proteins
121295856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
GRAM
RabGap-TBC_2
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
Glyco_trans_2_3
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
121295856
NCBI-ProteinID:
XP_041076891
LinkDB
All DBs
Position
20:954778..975304
Genome browser
AA seq
1156 aa
AA seq
DB search
MWLNPEEVLLKNALKLWATEKCNDYFVLQRRRGYGEGGEGLTGLLVGTLDAVLDSTAKVA
PFRILHQTPDSQVYWSIACGATREEIEKHWEWLQKNVMSTLSVFDSSEDITSFVQGKIRG
LIAEEGKSSLVKEEDPEKFREALLRFQKWFGLPKEEKLVTYYSCSYWRGRVPCQGWLYLS
TNFLSFYSFLLGAEVKIIISWDEMWKLEKTSTVLLTEGIHVRARGEDYDFSMFLHLNETF
LLMEQLADYSLRRLFDKETFEGDPALKDPLQITKRGLETRARNEQFRAFFRLSRSENLLE
VHESFLWVPFNQFNTLGKICMSESYLCFASQDGSQCYVIIPIREVLRVETPDKGSKALTV
CVRGKRALRFTEVRDFVHLAAKIRRKCGAAASPQHSDSGEVPREVCQALIEHCEDNPEEE
ALMVGQTGSSRAVSTEALMTVFHPQDAENLDPKMLKEKMKEQSWNIHFAEYGRGVSMFRT
SKTRDLIVRGVPEALRGELWMLFSGAVNDVATHPGCYAELVEKSVGTSTLATDEIERDLH
RSLPEHPAFQSDTGISALRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLLVA
VCERMLPDYFNHRIIGALVDQAVFEELIGLRLPQLTDHMTDMTFFSSVSLSWFLTLFISV
LPIESAVNVVDCFFYDGIKAVLQLGLAVLDYNMERLLRCHDDAEAVTSLNKFFDNITNKD
SPLPSTVQQAPVGNDGSKSQVTVDITDLIRGAPLMLSQLLPLRIDISACPDTCPPPAYGI
PRGPTGKRIGLRQDAAPPYLLKYGDIRSEEVESLRRRNRLYVIHTLEDTTKQNILRVVSQ
EVKFSAGDLDEMYELFKKQHFLSCYWSMSCPALTHHNPSLPYLEQYQLGSEEFRALYCLL
SPWAHCSSRDALALALATFRLLDENQDGLVNFKEFCCGLDVIYNGSFTEKLKFLFKLHIL
PALSEPVETGSPMVPKGRTLSKEDLMHLSRLDVSLPGLSQDGVIRKSPERGKGKVDLQAY
LKQWQDELLKKEESIKDLPRINQSQFIQFSKTLYNLFHGAPEEESLYRAVTTVTSLLLRM
EEVGRRLQGAQGEGSPPHTGTADSTPLREEEEKEWSFAFEQILASLLNEPVLVRFFEKPE
DMRAQLDHARAAQLKA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgaaccccgaggaggtgctgctgaagaatgcgctgaagctgtgggcgacggag
aagtgcaatgattacttcgttctgcagaggaggcgagggtatggggagggcggagaaggt
ctgacaggtctcctcgtgggcacgctggatgctgtcctcgactccacggctaaagttgct
ccatttcgcatcctgcatcagacacccgactcccaggtctactggtccatagcgtgcggt
gccaccagagaggaaatagagaagcactgggaatggctgcagaagaatgtcatgagcacg
ctctctgtgttcgattccagtgaggatattaccagcttcgtccagggaaaaataaggggt
ctgatcgcggaggaggggaagagctcgctggtgaaggaggaggacccagagaagttccgc
gaggcgctgctgcgcttccagaagtggtttggtctgccgaaggaggagaagctggtcacc
tattactcctgcagctactggagaggacgggtcccctgccagggctggctctacctgagc
accaacttcctcagcttttactccttcctgctcggagccgaagtgaagatcatcatctcc
tgggatgagatgtggaagctggagaagacatccacagtgctcctgacggagggtatccac
gtgagggcgcggggcgaggattatgacttctccatgttcctgcacctcaatgagactttc
ctgctgatggagcagctggctgactactccctcaggaggctgttcgacaaggagaccttc
gagggagacccggccctgaaggacccactgcagatcaccaagcgaggtctggagactcgc
gctcggaacgagcagttcagggcgttcttccgtctttctcgcagtgagaacctgctggaa
gtgcacgagagcttcctgtgggtgcccttcaaccagttcaacacgctgggcaagatctgc
atgtccgagagctacctgtgctttgccagccaggatgggagccaatgctacgtcatcatc
cccatccgcgaggttttacgtgtagagacgccagacaagggcagcaaagcactcaccgtg
tgtgtgcgagggaagagagcactgcgctttacggaggtcagagattttgtgcacctggct
gccaaaatccgcaggaagtgtggggcagccgcgagcccccagcacagcgacagtggagag
gtccctcgggaggtgtgccaggccctcattgagcactgcgaggacaatcccgaggaggag
gcgctgatggtggggcagacgggcagcagcagggccgtgagcaccgaggcgctcatgacc
gtcttccacccgcaagacgcagaaaacctcgatcccaaaatgctgaaagagaagatgaag
gagcagtcatggaacattcactttgctgagtatggccggggggtcagcatgttccgcacc
agtaagactcgagacctgatcgtgcgcggcgttcccgaggccttacgaggagaactctgg
atgcttttctcaggcgctgttaacgacgtggccacgcaccccggctgttacgctgagctg
gtggagaagtctgtgggcaccagcacactggcgactgacgagatcgagagggacctgcat
cgctccctccctgagcaccctgccttccagagcgacacaggcatctccgccctgcgcagg
gtcctcaccgcatacgcctacagaaaccccaagatcgggtactgccaggcgatgaatatc
ctgacgtcggtcctgcttctgtatgcgaaagaggaggaggccttctggttactggtggca
gtgtgtgagcgcatgctgcctgattacttcaaccacaggatcattggtgccctggtggac
caggccgtgttcgaggagctgattgggctccggctgccccagctgacggatcacatgacc
gacatgacgttcttctcgtcggtgtccctctcctggttcctcacgctcttcatcagcgtg
ctgcccatcgagagcgccgtcaacgtggtcgactgcttcttctacgacggcatcaaggcc
gtcctgcagctggggctggccgtgctggactacaacatggagaggctgctccgctgccat
gacgacgcagaggccgtcaccagcctcaacaagtttttcgataacattaccaacaaagac
agccctctcccatccacagtccagcaggccccagtggggaatgatgggagcaagtctcag
gtcacagtggacatcaccgatctcatccggggggccccgctaatgctctcgcaactacta
ccgctccgcatcgacatttccgcctgtcccgatacttgtccgccccccgcttatggaatt
ccgcggggcccgaccggtaaacgtataggcctgcgccaggacgccgcccctccgtatcta
ctcaagtatggagacatccgttcagaggaagtggagagcctgaggcggaggaacagactg
tatgtgattcacactctggaggacacgaccaaacaaaacattctcagggttgtctcccag
gaggtgaagttcagtgcaggtgacctggatgagatgtatgagttgtttaagaaacagcac
ttcctgagctgctactggagtatgagctgtcctgcgctgacgcaccacaatcccagcctg
ccttacctggagcagtaccagctgggcagtgaggagttccgggcgctctactgcctgctg
agcccctgggcacactgctccagccgggacgccctcgccctcgccctcgccaccttccgc
ctgctggacgagaaccaggacgggctcgtcaacttcaaggagttctgctgcggactggat
gtgatatacaatggaagcttcacagaaaaactgaagttcctattcaagctgcacatacta
ccagctctctcagaacctgtagaaacagggagccctatggttccaaagggccgcacactt
tccaaggaagatctgatgcacttgagtcggctcgatgtgtcgttacctggcctttcccag
gatggagtgataaggaagagcccagagagagggaaaggtaaggttgaccttcaggcatac
ctcaaacaatggcaggatgagcttctgaagaaagaagaaagcatcaaggatttacccaga
ataaaccagtcccagttcattcagttctccaagaccctgtataacctcttccacggagcc
ccagaggaggagtccctgtacagggccgttaccacggttaccagcctcctcctgaggatg
gaggaagtggggcgcaggctgcagggtgcacagggagaggggagccccccccacacgggc
acggcagacagcaccccgctcagggaggaggaggagaaggaatggtccttcgcgttcgag
cagatcctcgcctctctgctcaacgagccagtgctggtccggttcttcgagaagcctgag
gacatgcgggcccagctggaccacgccagggcggctcagctcaaggcctga
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