Polyodon spathula (Mississippi paddlefish): 121295980
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Entry
121295980 CDS
T07273
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121295980
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Cadherin related
121295980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_pro
Cadherin_4
EGF
hEGF
EGF_2
Big_3_4
cEGF
Motif
Other DBs
NCBI-GeneID:
121295980
NCBI-ProteinID:
XP_041077023
LinkDB
All DBs
Position
21:3649590..3702403
Genome browser
AA seq
2867 aa
AA seq
DB search
MICAILLSYFISSVLGGKTELRKPFFHGHVFENSPPGSKLNGLNIPIKRIDPQKWCSKLG
GMHLILLGEGSAAFHVYYHHKHGHILMKTTKSLDRELQSEYVLQLGICCQSCSSKDSVVA
EVALLKIDVLDTNDHEPTFNNTNIKITVDDATALRSVVYRVTASDADTGKNAELFYSIQP
KNGNFYVVPKTGEVLLVDSILGLASPIKFDVFTRDHGKPALTSSKMEVEIFPRRWSLAPA
EREAHYPGLLKKRRSLLQSENPVVITVSEDASIGSVVMSLNPVRFKSASFELMYPPVENS
PVSVTRDTGDIVIARRLDRETEPVVEITVKIQDKRGEDWYLIRVELIVTDVNDNVPEWAI
EPSPFLTVVSPAASPGTVVFRLLARDGDEGSYGEVEYFLSDGGDGRFDVDRKSGLIKTTG
LPLLKDKEYLLNVFAADKLGNRGQLAVVSVIAGPRAPQFTNTSYSISIPENTPDGQPFLA
VTAKSFQEKALIYSLLINPSSLFSIKKETGEISLTQSIDFENDQHRYLLLVRATESQEQL
SSAAEVLVMITDENDCIPEFLQSIYSKESVLETVTTATSLLQVSANDCDSGSNADISYYT
LSPDFTVSAHGTIFPARQLDYERPNHLYEFVIMAVDKGEPPRTGTATVRIRMSNVNDEPP
EFSQAIYRTFVSEDAGPNTLVATVQAKDPDGDGLTYKITTGNEEDNFVIDSQKGLIRLRS
SPPPSLQGIEYVLNVTATDDNASGGPHPLSSMAQVIVGIDDVNNNKPMFDKCQNYREHAS
VLENQPAGTLVLQVHADDADEGANGKVTYGFMHKDGTVPAFRIHPETGVIVTTRKFDREQ
QREYAVTVTATDKATEPLIGICQLNILILDENDNDPKFENLHYEYFLREDTMMGTSFLRV
AAHDDDYGTNAVITYSMSGEQPEYLRVNPVTGWVYVNEPISQRSYITREIIATDGGNRSS
AVELAVTITNVKNQPPQWEKDRYEVVIPENTMRDTPIVTIKAISPLGDPRVTYNLEDGLV
PETNKPVRFYLTPNREDGSASVLVAEPLDYEITRKFTLRVRAQNMAAVPLAAFTTVYINI
TDVNDNVPFFTSSIYEATVTEGAELGTFILQVSANDLDLGLNGKISYSMLKDRSGDYQFF
RINSQTGAIYTEAVFDREMKGSYLLEVKSMDGLESARPGKHGQANSDTAYVRIFISDVND
NKPIFAQSVYEVNVDEDADVGFVVITVSANDEDEGANAKLRYQITSGNTGGVFDVEPEVG
AIFISQTLDYEQVKRYRLHLLASDGKWEDYAVVIINVNNKNDEAPVFSMNEYYGSVTEEL
DGSPVFVLQVTAIDPDKDADQGALKYSLHGQGAESEFIIDEVTGKIYSQKTLNREDRAVW
RFVVLATDEGGEGLTGFTDVIINVWDINDNAPVFTCMPDNCNGNVLEHSPVDTSVMEMTA
TDMDDTTVGHNAVLTYRIVGNAKNGIHLDLFSINPTTGTIFVAMGALDREKMDKYFFVVE
AKDGGGMTGTGTATIWVTDVNDHAPKFTQHPCSARISENSDLNSAVLEVSATDADIGENA
QLTFSIIAGDPEQKFYIENHKKEQYGTIRLKKKLDYEKLNEQRFNLTLKVEDLDFSSVAH
CIVEVEDYNDHIPVFIPQFYQLNPLPENVQIGTSIAKMTATDTDSGPNGQITYSILAESD
PYGQFAVYQDGHVTVAKSLDRETVAQHYLILLATDQGSPAHTGSATVQLPLIDVNDNGPE
FEAAYMPVVWENVPGPQIVRMNQTSLHLHAVDRDIAENGSPFSFSLPQEFRNSTDFILRD
NGNNTATITALRQFDREEQKEFYLPIIIKDSGHPSKSATNTLTITIGDENDHPHEPGFKE
IYINNHRGRMPTTVLGKVYAPDRDDWDNKTYTSEGHVPKYFILNKKTGFLIIKENAPQGS
YEFKVRVSDGLWPDAVSSVKVHIKELRDEAIYNSGSVRLSDITAEEFVQKGEDGKSRYET
FKEFLAKIFPAPPDNINVFSVMNVKDRRTDIRFSVHGSSYFRPEKLHGYVAAYQQELQSV
LQLNVTQVHVDECVQTDCRDSAGCSNHLTVSDTPTVVDSGNTSLVSLTVGVNAVCTCSSR
EHLHQSCTSYPRNPCHNGGICMGSQNGYRCQCPPQFEGPDCQQTKHSFHGNGYAWFPPLR
PCFESHLSLEFITEVADGLLLYSGPVTESGLWDPEDFIAIELINGTPTLKINHGSGTLVL
TLPSHVNTADRRWHRLDVRGNGKEVRFTLDHCSGAEVTEIEGLGNKLSSEDRSNCEVTGE
TPNPDRHLNVNQVLQLGGVKEILPYSYPQLQHKHFTGCIRNLVMDSKFYDLGSPAESLNS
SPGCMVTDGNCVTMGYLSCGQRGKCQGEWGSFSCQCLPGFSGHQCEKGTPEYSLDGRSYI
QYQLAASLPARKTQLQVLIRTRKHSCIIMSMASKERAEYIRLEVFQGLLSVFYNLGDGDY
SMKLPSYRVDNGEWNMVHLDRHDNEFTLRLNGGGGRRELSSALGTNREIVIDPGTVVVGN
GFPTSHNKSFQGCMRDLRLNNRYVPLDSKRTELASIVSAQGVSVGCSSDSCKKNKCNPPF
VCVDLWRMHDCRCPTGHMLMENSTGKFCVFTLCANRPCHHGTCIAQSPSKFSCHCPEGYT
GRHCEITLAIYHDDVGLSFSSMFAICICFLALLVLLLGIFLWTRWRNYKGLKEGVYHVAA
HHDGWEGIHENVLNYDEEGGGEQDQNAYDMAELQKSLHPSPVQSAYAKSGGAHQHHDNGP
LRRDIPPPRGQNHGLFNTSRRSLSFSSQDLARYLCDIIRDADQQQEIPPFDSLQVYSTEG
GGSLAGSLSSFSSASMEEDKGYDYLKEWGPRFEKLKALYERAEASDI
NT seq
8604 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtgcaattttactgtcgtatttcatatcctcggttttggggggtaagacagaa
ctgaggaaacccttctttcatggacacgtgtttgaaaactcgccacccgggtccaaatta
aatggactaaacattcctattaaaaggatcgacccacagaaatggtgctcaaagcttggt
ggaatgcacctgatactgcttggagaaggtagtgctgcgtttcatgtgtattaccatcac
aagcacggtcacattttaatgaaaaccactaaaagcttggacagagagctccaatcggaa
tatgtactgcagctgggtatatgctgtcaaagttgttcgtcaaaagacagtgtagtggcc
gaagttgcattgctaaagattgatgtcttggacactaatgaccatgaacctacatttaat
aataccaatattaaaattactgtagacgacgccacagccttgagatcggtggtctacaga
gtaacagcatcagatgcagacaccggaaaaaatgcagaattattttactctattcagcct
aaaaatgggaatttctacgtggtacccaaaacaggagaagttttactggtcgattctatt
ctcggcttggcaagcccgattaagttcgacgttttcacaagagaccacggcaaaccggct
cttactagctcaaaaatggaagttgagatcttcccccggcggtggtccctggctccagcc
gagagagaagctcattacccgggtttactaaaaaagcggaggtcgctgttacaatcggag
aacccggtggtcataaccgtgtctgaagacgccagcatcggttctgttgtgatgagtttg
aaccctgtccggttcaagtcggccagtttcgagttgatgtaccctccggtggaaaactct
ccggtatctgtcaccagagacactggggacatcgtgatcgccagacggctggacagagaa
accgagcccgttgtggagattacagttaaaatacaggataaaagaggagaggactggtac
ctgattcgtgtggagctgatagtcactgacgtcaatgacaacgttccagagtgggccatt
gagccgtctccattcctcactgtggtgtctccagcagcttcccccggcactgtggtcttc
agactcctcgctcgagatggggatgagggaagctatggtgaggtggagtactttctgtca
gacggtggcgatgggaggtttgatgttgacaggaagagcggcttgattaaaaccacgggc
ctccccctgctaaaagataaggagtacctgctgaacgtgtttgcggcggacaagctgggt
aacagggggcagctggcagtggtgtctgttatagcaggaccccgggcgcctcagtttacc
aacacttcctattctatctctatccctgaaaacactcctgatggacagccgttcctggca
gtgacagccaagtccttccaggagaaagctctcatctacagcctcctcatcaaccccagc
agcctgttcagcatcaagaaggagacgggggagatcagcctgacgcagagcattgacttt
gagaatgaccaacaccgttacctgctgcttgtgagggctacagagagccaggagcagctg
agcagcgcagccgaggtcttggttatgatcacggacgagaatgactgtatcccagaattc
ctgcagtcaatctacagcaaagaaagcgtcctggagactgtaaccacggcaacctcacta
ctgcaggtgtcagccaatgactgcgactcagggtcgaacgctgacatctcctactacacg
ctgagccctgatttcactgtctccgctcacggcaccatcttcccagccaggcagctggac
tatgagaggcccaatcacttgtacgagtttgtcatcatggcagtggacaagggggagccc
ccccggaccgggacagctaccgtcaggatacgcatgtccaatgttaacgacgaaccccca
gagttctcgcaggccatctatcgaacttttgtctccgaggatgcggggcccaacactctg
gtcgcgacggtgcaggcaaaagaccccgacggagacgggctcacctacaagatcaccaca
gggaacgaggaagacaactttgttatcgacagccaaaaaggattaatccggctccggtcc
agtcctcccccaagccttcagggcatcgaatacgttcttaatgtcacggcaacggatgac
aatgcatcaggtggcccacaccccctttccagcatggcccaggtgattgtgggaatcgat
gatgtcaacaataacaaacccatgtttgataagtgtcagaattaccgggagcatgcctct
gtgttggagaaccagcccgcgggaaccttggtcctacaggtccatgctgatgatgcagac
gaaggtgccaatggaaaggtcacgtatggattcatgcataaagacggcacggtgccagct
ttccgcatccacccagagacaggagtgatcgtcacaacaaggaagtttgaccgcgagcag
cagagagagtatgccgtcaccgtcacggcaactgacaaggccacagagcctctcattgga
atctgccagctcaacatcctcatcctggatgaaaacgacaacgaccccaagtttgaaaac
ctgcattatgagtatttcctgagagaggacactatgatgggaaccagtttcctgcgtgtt
gccgctcatgatgatgattacggcaccaacgctgtcatcacttactccatgtcaggggag
cagccagagtacctccgggtcaatcctgtcactggctgggtgtacgtaaacgagcccata
tcccagaggtcctacattactcgtgagatcatagcaacagatggcgggaacagaagcagt
gcagtggagctggctgtaaccatcactaacgtgaagaaccagcccccacagtgggagaaa
gaccgctatgaggtcgtcattccagagaacaccatgagagacacacctattgtgactata
aaagccatatcacctctgggtgacccaagggtgacctacaacctggaagacggactcgtt
cctgagacaaacaagccagtgcgtttctacctgacccctaaccgcgaggatggctcagcc
tctgtactggtagccgagccactggactatgagatcaccagaaagttcacgttgagggtg
cgggcacagaacatggctgctgttcctctggcagccttcaccactgtttacatcaacatc
acagatgtgaacgacaatgttcccttttttacctcttcgatttatgaggctacagtcaca
gaaggcgctgaattagggacctttattcttcaagtatccgccaatgacctcgacttgggc
ctcaatggaaaaatctcttattccatgttaaaagaccggagtggagactatcagtttttc
agaatcaactcccagacaggtgcaatctacacagaagcagtttttgaccgggagatgaag
ggatcctatcttctggaggtgaagtctatggatggcttggagtcggccagaccaggaaaa
catgggcaggctaattcagacactgcatatgtacgcattttcatcagtgatgtgaatgat
aacaagcccatctttgctcagagtgtctatgaagtcaatgtagatgaggacgcagacgtt
ggcttcgttgttatcactgtcagtgctaatgatgaagatgaaggtgccaatgccaaattg
aggtaccagattacgtctggtaacactggaggagtgttcgatgtggagccggaggttggt
gccatcttcatttctcaaaccctggactacgagcaggtcaagaggtacagacttcacctg
ctggcttcggatggcaaatgggaggactacgccgttgtcatcatcaatgtcaacaataag
aacgacgaggcccccgtcttctcaatgaatgaatactatgggagtgtgacagaggagctg
gatggatcacctgtgttcgtactgcaggtgactgcaattgaccctgacaaggatgcggac
cagggtgccctgaaatactccctgcatggacaaggagcggaaagtgaatttataatcgac
gaggtgactggaaaaatctattctcaaaagacactcaatcgggaggatcgggcggtctgg
cggtttgtcgtgctggcgactgatgaggggggagaggggctgacaggattcacagacgtg
atcattaacgtgtgggacattaacgataacgctcctgttttcacctgcatgccagacaac
tgcaacgggaacgtgctggagcactccccagtggacacctctgtcatggagatgacagct
accgatatggatgatacgacggtgggtcataatgccgtgttgacttacagaattgttggg
aatgcaaagaatggcattcatttggacttgttcagcattaatcctacaactggaacaatc
tttgtagcaatgggggctttggatagagaaaaaatggacaagtacttttttgttgtggaa
gcgaaagacggtggaggaatgacaggaactggcactgcaactatctgggtgacggatgtt
aatgaccatgcacctaagttcacccaacatccttgtagtgcaagaatctctgagaacagt
gacctgaactcggctgtgctggaagtttctgcaacagatgcagatataggtgagaatgcc
caattgactttcagtatcatcgctggagacccagagcagaagttctacattgagaaccac
aaaaaggaacaatacgggacgataagactaaagaagaaactagactatgagaaattaaat
gagcagcggtttaatcttacccttaaagtggaagacctggatttttccagtgttgctcat
tgcattgtagaggttgaggattacaatgaccatattccagttttcattccccagttctat
caactcaaccctttaccagaaaatgtccagatcggtaccagtattgccaagatgacagcc
actgatacagattctggtccaaatggacaaatcacttacagcattcttgctgaatcagac
ccatacgggcagtttgctgtttaccaagatggacatgtcacagttgcaaaaagtctggat
cgtgaaacggttgcacagcattatcttattctactggccacagatcagggaagtcctgcc
cacacaggaagtgccacagtgcagttgccccttattgatgttaatgacaatggaccagag
ttcgaagccgcctacatgcctgtggtttgggaaaacgtcccggggcctcagattgttcga
atgaaccagacctctttgcatctccacgcggttgatagagatatcgctgaaaatggctcg
cccttctcatttagcttgcctcaggagtttagaaacagtacagactttatcctgagagac
aatggcaataacacagccactatcacagcactgaggcaattcgacagagaggaacagaaa
gagttttatcttcctatcatcataaaagacagtgggcatccttcaaagagtgctaccaat
actctgaccatcaccataggggatgaaaatgatcatccccatgagccaggattcaaggaa
atctacatcaacaaccacagagggagaatgccgacaactgttctggggaaggtttacgct
ccagatcgagatgactgggacaacaaaacttatacctctgaggggcatgtaccaaagtac
ttcattttgaacaaaaagactggctttcttataatcaaagaaaatgcacctcagggtagt
tatgagtttaaggtcagggtatcggatggactctggcccgatgctgtatcgagtgtgaaa
gtccatatcaaagagctccgagacgaagcaatttacaactctggctccgtacgcctctca
gatatcacggcagaggagtttgttcagaaaggggaagatggcaagagcaggtacgagact
ttcaaggagtttctggccaagatcttccctgctcccccagacaacatcaacgtgttcagt
gtgatgaacgtgaaagacaggaggactgacatcaggttctctgtgcatggctcctcatat
ttcagaccagaaaaactgcatggatacgttgcagcctaccaacaggagctgcagtcggtt
ctccagttgaatgtgacccaggtccatgttgatgagtgtgtacagactgactgcagagac
agcgctggctgctccaatcacctgacggttagcgacacgcccacagtggtggattctggg
aacacgtccctagtctctctgacagtgggagtcaatgcggtatgcacttgtagtagccgc
gaacatctccaccaatcgtgtacctcttacccacgaaatccctgtcacaatggcggcata
tgcatgggcagccaaaatggatacaggtgtcagtgtcctcctcagtttgaaggccctgac
tgccagcagaccaaacacagtttccatggcaatggctatgcttggtttccccccttaagg
ccttgttttgaaagtcacctctctctggagtttatcactgaggttgcagatgggctgctt
ctttacagtgggcctgtgacagagtctgggttgtgggacccagaagacttcattgcaata
gagctcataaacggtactccaacgctgaaaattaaccatggctcaggcacactggtgcta
acgctcccgagccacgttaacacagctgacagaaggtggcaccgtttggatgtgagaggc
aatggcaaggaggtgcgcttcactctggaccactgcagcggtgctgaagtcacagagatc
gagggtctgggaaacaagctgtcttcagaagaccgttccaactgtgaggtgacaggggaa
actcctaatcctgacaggcacctcaatgtgaaccaggtgctgcagttgggtggggttaaa
gagattctcccatacagctaccctcagctgcagcacaagcacttcactgggtgcatccgg
aaccttgtcatggacagcaagttctatgaccttgggtctccagctgagtcattgaacagc
tccccgggctgtatggtgaccgatggcaactgtgttaccatgggctacctgtcctgtgga
cagcgagggaagtgccaaggggagtggggctccttcagctgccagtgtctgccaggattc
agcgggcaccagtgtgaaaaagggacccctgagtactcccttgatggcaggagctacatc
cagtaccagctggctgcctcactgcctgccaggaagacccagttgcaagtcttgatccgg
acccgcaaacacagctgcatcatcatgagcatggcctcaaaagagcgagccgagtatatc
agactggaagtgttccaggggctgttgtcagtgttctacaatctcggggacggagactac
agcatgaaactgccgtcctaccgggttgacaatggggagtggaatatggtgcacctggat
cgccatgacaacgagtttaccttgcgtctgaatggaggtggggggcggagggaacttagc
tcagctctgggaacaaaccgagagattgtcattgaccctggtacagtggtggtcggtaat
ggcttccccaccagtcacaacaagagctttcaaggatgtatgcgggatctccggctgaat
aaccgctacgtgcctctggactccaagaggacggagctggcgtccattgtgagcgctcag
ggagtcagtgtgggatgctcctctgactcctgtaagaagaacaagtgcaacccccccttt
gtctgtgtagacctctggaggatgcatgactgcagatgccctactggccacatgctgatg
gagaactccactggcaaattctgtgtcttcaccctgtgtgccaaccggccgtgccaccat
ggtacctgcatcgcccagtccccgtcgaaattcagctgccactgcccagagggctacacg
ggccggcactgtgaaattacgctggctatataccatgatgacgtggggctcagtttcagc
tcaatgttcgcaatctgcatttgcttcctggcgctcctagtgctcctgttgggtattttt
ctctggacccgctggaggaattataaaggattgaaagaaggtgtttatcacgtggctgcg
caccatgacggctgggagggcatccatgagaatgtgctgaactatgacgaggaaggggga
ggggagcaagaccagaatgcctatgatatggctgaactgcagaagtctctccatcccagc
cctgtgcagtctgcctatgccaaatctggaggggcccaccagcatcacgacaatggcccc
ctgcgcagggacatcccaccacccaggggccagaatcatggtctcttcaacacctccagg
aggagcctgtccttctccagccaggacctggctcgttacctttgtgacatcatcagggat
gcagaccagcagcaagagatcccacccttcgattcgctgcaggtctactccacagagggg
ggcggatctctggccgggagcctcagctcattcagctctgccagcatggaagaggacaag
ggctatgactatctcaaggagtgggggcccagattcgagaagctcaaagcactgtacgaa
agagctgaggccagtgatatctga
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integrated database retrieval system
