Polyodon spathula (Mississippi paddlefish): 121296009
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Entry
121296009 CDS
T07273
Name
(RefSeq) actin-related protein 2/3 complex subunit 1A-A-like
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
pspa04517
IgSF CAM signaling
pspa04530
Tight junction
pspa04810
Regulation of actin cytoskeleton
pspa05100
Bacterial invasion of epithelial cells
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121296009
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121296009
09144 Cellular community - eukaryotes
04530 Tight junction
121296009
09142 Cell motility
04810 Regulation of actin cytoskeleton
121296009
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121296009
05100 Bacterial invasion of epithelial cells
121296009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121296009
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121296009
Membrane trafficking [BR:
pspa04131
]
Others
Actin-binding proteins
Arp2/3 complex
121296009
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
121296009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
Beta-prop_IFT140_1st
WDR55
WD40_Gbeta
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
RMC1_N
Rax2
EIF3I
Tricorn_2nd
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
121296009
NCBI-ProteinID:
XP_041077071
LinkDB
All DBs
Position
21:25610810..25615384
Genome browser
AA seq
357 aa
AA seq
DB search
MSLYSFGLDPVSCHAWNKDRTQIAISPNNNEVHIYQKSGKEWTKTHELTQHSGRITGIDW
APISNRIVTCASDRNAYVWTLKDRVWKPTLVLLRINRAATCVKWSPLENKFALGSGARII
SVCYFEKENDWWLSKHIKKPIRSTVLSLDWHPNNILLAAGSSDFQCRVFSGYIKDIEEKP
GPTAWGSKMPFGEMLLEQGDDGGWVHSVCFSPSGNSLAWVSHGSTICVTDAANKKTVTQL
KTEYLPLLAVLYLNETEIVAAGHDCCPYQFSYTGPDSLKYIGKIDLRKQNSKVSMSAMQH
FRNLDKKATTENENTDLETLHQNSISQLCIVEGDRSKVTKFSSVGLDGDMVIWDFKH
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgtacagcttcggcttggatccagtatcctgtcacgcctggaacaaagatcgg
actcaaattgctatcagccccaacaataatgaggtccatatttaccagaagagtgggaaa
gaatggaccaagactcatgaactgacgcaacacagtgggcgcattacaggtattgactgg
gccccgatctcgaaccgcattgtgacatgtgcatcagacagaaacgcctatgtgtggacc
ctgaaggacagggtgtggaaacccaccctggtcctgctgaggattaaccgtgctgccacc
tgcgtcaaatggtcacccctggagaacaagtttgctctgggcagtggggctaggatcatc
tccgtgtgctattttgagaaggagaatgactggtggctgagcaagcacattaaaaagcca
atccgctcgactgtgctgagtctggactggcacccgaataacattctcctggctgccggg
agttcggatttccagtgcagagtgttctcaggctacatcaaggatatcgaggagaagcct
gggcccacagcctggggctccaagatgccattcggggagatgctgctggagcagggggat
gatggaggttgggtccacagcgtctgtttctccccatctggaaatagcctggcctgggtt
agtcatggcagcactatctgtgtcactgatgctgccaataaaaaaactgtgacccagctg
aagactgagtatctccctcttcttgctgtgctgtatctcaacgagaccgaaattgtggct
gcgggccacgactgctgtccctatcagttctcgtacacgggcccagactccctcaagtac
atcggtaaaatcgaccttcgcaagcagaactccaaagtgagcatgtcagccatgcagcac
ttccgcaatctggacaagaaggcaacaacagagaatgagaacacagacctggagactctg
catcagaacagcatcagtcagctgtgcattgttgaaggggatcgatcgaaggtgaccaag
ttcagcagtgttgggctagatggagacatggtcatctgggatttcaagcattaa
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