Polyodon spathula (Mississippi paddlefish): 121296035
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Entry
121296035 CDS
T07273
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121296035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121296035
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121296035
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121296035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
zf-B_box
ANCHR-like_BBOX
DAHL
Mt_ATP-synt_D
CC_BshC
DUF4407
Motif
Other DBs
NCBI-GeneID:
121296035
NCBI-ProteinID:
XP_041077113
LinkDB
All DBs
Position
21:complement(29220263..29227719)
Genome browser
AA seq
681 aa
AA seq
DB search
MAGEPSSLSSLEEELTCSICLSIFNNPVTTPCGHNFCLSCLDLTWKDDLALGYSCPQCRN
HFYAKPTLHKNTVLSTVVDTVSKSLKGKSQDETKGAALDSTVIFCDTCMVSKASKTCLTC
MVSYCDSHLRPHLDNPVFHVHQLTEPLPDLQQRICKEHHKTLEFFCKDHNKCICGACLHS
HLTCKFTSLDCEIAEKEKNLKEKLATLRGQIEKTKNVIFEMKGEQSSLRDSAVNRKAELE
AEYRVMKDLIEKDEREAMNLLDREEESAQARIQSLMQRMTKNIEEMSSCKDQIESVLAQG
QQIAVLQCTIDLPKSATLTPYAPGINMNSKQLKMYNSSAMSLKKYLTDVLSLPVEERVQM
LNAGADKTSDVAEDNNPTNKPRERINKSGKSPKPPKLRDLPKNTKNPQLLPVVSVPVPLF
SGNSLLGAFYYGHTSQNYMSKIIKPIDPTEVKNRHDLQQKYPKPLPVSVPVPLFSGNSLL
GDFVSKVDKPFNPTEVKNRNDLLQYAFDLTLDAKTAHRRIVISDNFTKASVSDEMMSYPD
SPARFTVCSQVLCSKGFSRGRHYWEVKMTSSNFCAIGVASGSIERKGATSKLGRNKESWC
IEWFNVKLSAWHDQRETALENPSSSRVGVLLDCDGGSLTFYSISDHLRLIHTFSCRFPEA
VYPAFWLFSSGTAVSLCKPTA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggccggggaaccgtcgtctttgagcagtctggaggaagagctgacgtgttccatctgc
ctgagcattttcaacaacccggtgaccacaccgtgtggacacaacttctgcctgagctgt
ctagacctgacctggaaggacgacttggctctaggctacagctgccctcagtgcaggaac
catttctacgccaaacccaccctgcacaaaaacaccgtgctgagcactgtggtggacacc
gtcagcaagtcactgaaaggcaagagccaggacgaaacgaagggagcggctttggattcg
actgtaatattctgcgacacctgcatggtctccaaagcctccaagacttgtctgacgtgc
atggtctcctactgcgactcccacctcagaccgcacctcgacaaccccgtctttcacgtc
caccagttgaccgaacccctgcctgacctgcagcagcgcatctgcaaagagcatcacaag
acgctggagttcttctgcaaggaccacaacaagtgcatctgtggagcttgcctgcactcc
cacttaacctgcaagtttacttcactcgattgcgagatcgccgagaaggaaaaaaattta
aaagaaaaactggctacgctgagaggacagattgagaaaacaaagaatgtcatttttgag
atgaagggagagcagtcgtctctcagagattcagcggtgaacagaaaggctgagcttgag
gcagagtaccgcgtgatgaaagacctcatcgaaaaggatgagagggaggcaatgaacctg
ctcgatcgtgaagaggagagtgcccaagcccggatccagagcctcatgcagagaatgaca
aaaaacattgaggagatgagcagctgcaaagaccagattgaaagcgtgctggctcagggg
cagcaaatcgcagttctgcagtgcacaatagatcttccaaaatcagcaacattgactcct
tatgctcccggaatcaacatgaattcaaaacaactgaaaatgtacaactcaagtgccatg
tctctcaagaaatacctcacagacgtattaagcctgccagtggaggagagagtccaaatg
ctgaatgcaggcgcagataagacttctgatgtagctgaggacaacaaccccacaaataag
ccaagggagaggatcaacaagagcggcaaatctcccaaaccaccaaagctcagggatctg
cctaaaaataccaaaaatccacaattgttgcctgttgtttctgtaccggttccactgttt
agtggaaatagccttctgggagcattttactatggacacacatctcaaaattatatgtca
aagatcatcaaaccgatcgatcctacagaagtaaaaaacagacacgatcttcaacaaaaa
tatccaaaaccactgcctgtttctgtacctgtcccactgtttagtggaaatagtctcctg
ggagattttgtgtcaaaggttgacaaaccattcaatcctacagaagtgaaaaacagaaac
gatcttctgcaatatgcttttgaccttacactggatgccaaaaccgcacacagaagaatc
gtcatctcagacaatttcaccaaagcgtcagtctcggatgagatgatgtcatacccggac
agcccagcgagattcacagtctgctcccaggttctgtgctccaaaggattctccaggggg
cgtcactactgggaggtgaagatgaccagcagcaacttctgcgccattggcgtggcatct
ggcagcatcgagcgcaagggggcgaccagcaagctggggaggaacaaggagtcgtggtgc
atcgagtggttcaacgtgaagctgtccgcttggcacgaccagcgtgagacagccctggag
aaccccagctccagcagagtcggggtgctcctggattgcgacgggggctccctcaccttc
tacagcatctcagaccatctcagactcattcacaccttctcatgccgctttccagaagcc
gtctatccggctttctggctgttttccagcggcaccgcagtgtctctgtgcaagccgact
gcctaa
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