Polyodon spathula (Mississippi paddlefish): 121296190
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Entry
121296190 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 35-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121296190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121296190
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
121296190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
121296190
NCBI-ProteinID:
XP_041077402
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All DBs
Position
21:complement(4768573..4787142)
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AA seq
796 aa
AA seq
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MPATQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
SFPQSRRDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEQPEEETTGDINDSM
DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVEKYKQ
IVLSGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQHVNVKNIII
ALIDRLALFAHREDGPGIPVDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSRELTRLLKIPVDTYNNIVTVLKLKH
FHPLFEYFDYESRKNMSCYILSNALDYNTEIIAQEQVDAILSLVSTLIQDQPDQPTEDPD
PEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTSRKHFGAGGNQRIRYTLPPLIFAAYRLA
FRYKESSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRVFLQGALAAGEIGFENHE
TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
LKKPDQCRAVSICAHLFWSGRNTDKNGEEIHDGKRVMECLKKALKIANQCMDPSLQVQLF
IEILNRYVYFYEKENDVVTVQVLNQLIQKIREDIPNLEASEEAEQINKHFHNTLEHLRLR
KESPEADGPIYEGLVL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccactcagcagtctcctcaggatgagcaggaaaagctcctggatgaagcaatt
caggctgtgaaggtccagtcctttcagatgaagcgctgcctggacaagaacaagcttatg
gatgctctgaaacatgcctcaaacatgcttggagagctgaggacttccatgctatcacca
aagagttattacgaactctacatggccatttctgatgaactgcattacctggaggtatac
ttgactgacgagtttgctaaaggcagaaaggtggcagatctctacgaactagttcagtat
gctggaaacatcataccaaggctttacttgctgatcactgtgggtgtggtgtacgtgaag
tcgtttccacagtctcggagggatatcctgaaggacctggtggaaatgtgccgaggagtg
cagcatccccttcgaggcctcttcctcagaaactaccttctgcagtgcaccagaaacatc
ctgccggacgaaggagaacagccagaagaggagactactggagacattaacgactcgatg
gactttgtgctgctgaactttgcggagatgaacaagctgtgggttcgaatgcagcatcag
ggtcacagcagagaccgggagaagagggagcgagagcgtcaggagctgaggattcttgtc
gggaccaaccttgtccgtctgagccagttagagggagttaatgtggagaaatacaaacag
attgtgctgtctggcatcttggagcaagtggtaaattgcagagatgcccttgctcaagaa
tacctcatggaatgtattattcaggtctttcctgatgagtttcatcttcagaccctcaat
cctttcctgaggtcctgtgctgagctgcaccaacatgtgaatgtcaaaaatatcatcatt
gctctgattgacaggcttgcattgtttgctcatcgagaggatggccctggaattccagtt
gacattaaactgtttgatattttctcacaacaagtagctactgttatccagtcaagacag
gacatgccatcagaggatgtggtttcattgcaagtgtccctcatcaatctggctatgaag
tgctatcctgaccgggtggactacgttgacaaagttctggagacaactgtggaaatcttt
aacaaactaaaccttgaacatattgcaaccagcagtgcagtatcaagagagctgaccaga
ctgctaaagatccccgtcgacacctacaacaacattgtgacggttctgaaactgaaacac
ttccatcctttgtttgagtacttcgactacgagtctcgaaagaacatgagttgctacatc
ctgagcaatgctctagattataacacagagattatcgcacaggagcaggtggatgccatc
ttgagcctagtgtcgaccctgatccaggaccagccagaccaacccacggaggaccctgat
ccagaagactttgcggaggagcagagtctcgtgggcaggttcattcacctgcttcactca
gaggaccccgaccagcagtatttgatcctaaacacatcgaggaagcactttggtgcgggt
gggaaccagaggattcgatacacactaccccctttgatatttgcggcatatcggcttgct
ttccggtataaagagagctcaaaagtggatgacaagtgggaaaagaagtgccagaagatc
ttctcgttcgcccaccagaccatcagtgctcttatcaaagcagagctggccgagctacct
ctccgggtctttctgcagggggcgctggcagccggagagattggctttgagaatcatgag
acggtggcgtatgagttcatgtcgcaggcattttctctttatgaggatgaaatcagtgat
tctaaggcccagctggcagcaatcacactgataattggaacatttgagaggatgaaatgt
ttcagcgaagagaaccatgaacctttaaggacacagtgtgcactggctgcttcaaaactc
cttaagaagcctgatcagtgccgtgctgtcagcatctgtgcacatctcttctggtctggt
cgaaacaccgacaagaacggggaagagattcatgatggaaagagagtgatggagtgcttg
aagaaagctctgaagattgccaaccagtgcatggacccatcattgcaagtccagctcttc
attgaaatcctaaacagatacgtctacttttatgaaaaagaaaatgatgtggtgacagta
caagtcttaaaccagctcattcagaagataagagaagatattccaaacctagaagccagc
gaagaagccgagcaaattaacaaacactttcacaacacactggagcatttgcgcctgcgg
aaagagtcccctgaggccgatggaccgatctacgaaggtcttgtcttgtaa
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