Polyodon spathula (Mississippi paddlefish): 121296208
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Entry
121296208 CDS
T07273
Name
(RefSeq) integrin beta-4-like isoform X1
KO
K06525
integrin beta 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04518
Integrin signaling
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121296208
04518 Integrin signaling
121296208
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121296208
09142 Cell motility
04820 Cytoskeleton in muscle cells
121296208
04810 Regulation of actin cytoskeleton
121296208
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121296208
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121296208
04515 Cell adhesion molecules [BR:
pspa04515
]
121296208
04090 CD molecules [BR:
pspa04090
]
121296208
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121296208
Exosomal proteins of bladder cancer cells
121296208
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin beta subunits
121296208
CD molecules [BR:
pspa04090
]
Proteins
121296208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
EGF_integrin
Integrin_B_tail
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
PSI_integrin
EGF_2
I-EGF_1
EGF_Teneurin
EGF_TEN
SEA
Motif
Other DBs
NCBI-GeneID:
121296208
NCBI-ProteinID:
XP_041077439
LinkDB
All DBs
Position
21:19931022..19976123
Genome browser
AA seq
1963 aa
AA seq
DB search
MERWEVCLSVGMVLLMLLCTTSEARVNRCLAAQASTCTECIQVGKDCSFCTDEDFKLPRC
DLLKNLKDHQCMNRVELFSEMSFQKNVAIDMSLKKTQVSPQRMTMRLRAGEEKVVQMQVF
EPTETPVDLYILMDFSNSMSDDLANLKRMGDELAKVVSTELSSDYTIGFGKFVDKVTVPQ
TDMRPSKLKQPWPDSDPPFSFKNVIPLTNDTFKFRTELDKERISGNLDAPEGGFDAILQT
AVCTNQIGWRDQSTHLLVFSTESAFHYESDGANVLSGILKRNDEQCHLSQHGTYTHDTVQ
DYPSVPTLVRLLQNNNIIPIFAVTNHSYSYYEKLSQYFPVSDVGKLSEDSSNIIDLLRRA
FNNIRSKISIHSNSVPKAFHTEILSSQASEVTHTGSFKLSPGEKGTFIVKVKALEEVGGE
HVCKLSEVEKKGNIRIKPTSFTDALTIDAAVICTACDCEKNPIQKSLKCGGNGDLVCGQC
RCNDGWIGPYCNCSVDAKDDGRACIGPNSSKVCSGRGECLCGTCQCYMSQNPLERYEGPF
CEFDNFQCQRFGGFLCNARGRCFLGECACEDGWQGSACECPSSNATCIDSNGGICNGRGK
CNCGRCVCDENQPYTGSTCETTSLSLLGMCADTRTCVQCQAWQTGEKKGDKCKECPFRIK
IVDELKKEEEVIEKCSFRDEEDDCTYHYTVDSNPNSDSKENQVIEVFKKKDCPPAGFLWL
IPLIMFLMLLAGLLLLCCWKYCAWYKACLAMLPCCGRGRMVGFKEDKYMLQQRLLTSDHL
DTPMVRTGPPKGTDVVRWKIKDNVHRQAASYNQALNPKDIVPYGVSLRLARLFTENLSRP
DTRESDHVRREVEENLNEIYRQVPGAQKVQRTQFRLQPNAGKRQDHAIVDTVLEAPRFAQ
PDILKVTEKHVQMGNFNDLKVVPGYYTVASDRDAQGLVEFQEGVESLDVHVPLFIKDEDD
DQKLLKVEAVDVPQGIAEIGRRLVNITVIKDHGANLQSKARSTLSFLQPSYTYSRQEKVA
TIPVMREGDNGRTQVTYCTRDLTAKDEKDYVSTEGELTFHPGETQKNISVKLLELSETDS
LLGDKQIKQFVMDLTNPKYGAKLGKYPRTTVTIADTPEPGVVMFKKSSQTYTTQDQLYTV
PVVRTRNLESPASIWWRTRNTSRFQLSSPLTFSPGEAEKNIVIDPRVGPGPIKAETFQLE
LFNPSDNTVIGERKSTVVSVMPSGDFPWSPESLPETMEMQSMTQSSGIRSPSGRLAPPLN
VTAQATGPKNIRMLWIPPPGKPSGYKVKYWIQGDSESDAQVIDCKGPPVELSNLYPYCEY
EMRMCAYNSMGEGHYSDVVHCCTLEDVPSEPGRLAFNVINSTVTQLSWAEPAETNGDIKA
YEVTYTPITEDKKAMGPTKTVRIEDPKKRMILIENLVESQTYLYTVRARNGAGWGPARDA
TINLATQPKRPMSIPIIPDIPIIDAEAGEGYDSFLMYSADVMRSPTGSKHPSVSDEDQFT
NDRWDQSYLYQGGGGSLSRTTTTSYKQLSPNSQMSLNSQFETRTIGGGGSTITKEYHTTL
MPGQEVPGRLHTHREEDTGRSGFRTDEVVLRTRTEMKGYYGDDGVRDSIVMADEPSGFSE
SLGLSGYSKKMVNYSISHSMRGHTQSEDVNDVLQNLNMLQDPRLPPGVPDTPTRLVFSAL
GPTSLKVSWQEPHCEKAVQGYCILYQLISGGDVKRIDIPNPAENSVVVKELLPNHSYVFK
VKAHSEEGWGPEREGVITIESQVDPNSPLSPVPGSPFTLSTPNAPGPLVFTALSPEELQL
SWDKPRKPNGDILGYMVTCEQLHGGGEVRSFQVNGDSSETTLTVPNLNENMPYKFKVQAK
TTQGFGPEREGIITIESQDGANFSHFGNQQMMRREVYNLPGEITTKTTHTTFNDPCFSDG
GMITSQHTSGGTVTRQVTKEIVSSMTMMSGGTVTKKIEKFYKA
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atggagagatgggaagtgtgtctctctgtggggatggtcctcctaatgttgctctgtacc
accagtgaagcaagagtgaatcgctgcctggctgcacaagcctccacctgcacagaatgt
atccaagttggtaaagactgctccttctgcacagatgaggatttcaagctaccacgatgt
gatctcctcaaaaacctgaaagaccatcagtgtatgaacagagtggagctattcagtgag
atgagtttccagaagaacgtggctattgacatgtctctgaagaagacacaagtgtctccc
caacggatgacaatgcgtctgcgtgcgggcgaggagaaggtggtccagatgcaagtcttt
gagcccactgagacccccgtcgacctctacatactaatggacttttcaaactccatgtct
gacgatctcgctaacctcaagaggatgggagatgaactggctaaagtggtgagcactgag
ctatccagtgactacaccattggctttggtaaatttgttgataaagtgaccgtgccgcag
acagacatgagaccctctaagttgaaacagccatggccggacagtgacccacccttctcc
tttaaaaatgtgatccctttgacgaatgataccttcaagttccgaaccgagctagacaag
gagcgcatctcaggaaacttggatgctcctgagggagggtttgacgccattctccagaca
gctgtctgtacgaaccagatcggctggcgcgaccagagcactcatcttctggtgttctcc
actgagtctgccttccactatgagagcgacggtgccaacgtgctgtcggggatcctgaag
cgcaacgatgagcagtgccacctgagccagcacggcacctacacacatgacactgtgcag
gactatccctcggtgcccacactggtgcgcctactgcagaataacaacatcatccccatc
ttcgccgtcaccaaccactcgtactcctactatgagaaactgagtcaatacttccctgtg
tcggacgtagggaagctctcagaggactcttccaacattattgacctgctgcgcagagcc
tttaataatatccgctcaaaaatcagcatccactccaacagcgttcccaaagcgttccac
acagagattttgtcttctcaggcctctgaggtgacacatactgggagtttcaaactgtcc
cctggagagaagggcacgttcatagtgaaagtgaaggctctggaggaggtaggaggggaa
cacgtctgcaagctctctgaggtggagaagaaaggaaacatccgcatcaaacccacgtcc
ttcactgatgcgctcaccatcgatgccgctgtcatctgcactgcctgcgactgtgagaag
aacccgattcagaaatctctgaaatgcggagggaacggagatttggtgtgtggccagtgc
cggtgcaatgatggatggataggaccctactgtaactgctcagtggatgcgaaggacgac
ggcagggcctgtatcggtccgaacagtagcaaggtgtgcagtggaagaggagagtgtctt
tgtggcacctgccagtgctacatgtcacagaacccgctggagcgctacgagggccccttc
tgcgagtttgacaacttccagtgccagcgtttcggaggattcctctgcaacgctcgtggc
cgctgtttcttgggggagtgcgcctgtgaggatggatggcaaggctcagcctgcgaatgc
ccctcaagtaacgccacctgtattgacagcaatggggggatctgtaatggtcgtgggaag
tgtaactgcgggcggtgcgtgtgtgatgagaatcagccgtacaccggcagcacctgtgag
accacctccctgagcttgctgggcatgtgcgcggacacacggacctgcgtccagtgccag
gcctggcagactggcgagaagaaaggagataaatgcaaggaatgccctttcagaatcaag
atagtggacgagctgaagaaggaggaggaggtgattgagaaatgcagtttccgagacgag
gaggatgactgcacctatcactacactgtggactcgaaccccaactctgattccaaggag
aaccaagtgattgaagtgttcaagaagaaagactgccctccggctgggttcctctggctc
attcccctcatcatgttcctaatgctactggcggggctgctgctgctgtgctgttggaaa
tactgtgcctggtacaaggcttgcctggccatgttgccatgttgtggacgaggtcggatg
gtgggattcaaggaggataagtacatgctgcagcaaagactgctcacctcggaccacctg
gacacacccatggtgcgcaccgggccccccaaggggactgacgtggtgagatggaagatc
aaagacaacgtgcacagacaggctgcctcctacaaccaggccctcaaccccaaggacata
gtcccctatggtgtgtccctccgcttggcccggctcttcacagagaacctgtccagacca
gacacccgggagagtgaccatgtgcgacgggaagtcgaggaaaacctcaatgaaatttac
aggcaggttcctggagctcagaaggttcagagaacacaattcaggctgcagcctaatgca
ggaaaaaggcaggaccatgccatcgtggacactgtgctagaggctcctcgcttcgcacag
ccagacatcttgaaggtgacagagaagcacgtccagatgggcaacttcaatgatctgaag
gtcgtcccaggatattacactgtggcttctgacagagatgcgcagggattggtggagttc
caggagggggtggagtctctggatgtgcatgtgccgctcttcatcaaggatgaagatgat
gatcagaagctgctgaaagtggaggcggtggatgtgccgcagggcattgcagagattgga
cgcagattggtcaatatcactgtcatcaaggaccatggagcaaacttacagtccaaagcc
agaagcaccctgtccttcttacagccctcctacacgtacagccgccaggagaaggtcgcc
accatccctgtgatgagagagggagacaacgggcgcacccaggtcacttactgcacccgg
gacctcactgccaaagatgagaaggactacgtgtcaacggagggtgagctgaccttccat
cctggcgagacccagaagaacatctcagtgaaactgctggaactctcagagacagactct
ctcctcggggacaaacagatcaagcagtttgtcatggacctcaccaaccccaaatatggt
gccaagcttgggaagtacccacgaaccactgtcaccatagcagacacccccgagcctgga
gtggtgatgtttaagaagagctctcagacctacactactcaggatcagctctatacagtc
cctgtggttcgaacccgcaacctggagagccccgcgtccatctggtggcgaacacgcaac
acgtcccgcttccaactgtccagcccactgacatttagccctggagaggcagagaagaac
attgtcattgacccccgcgtaggtcctggacccatcaaggcagagaccttccagctggag
ctgttcaaccccagtgacaacacagtgatcggagagaggaagagcacagttgtctcggtc
atgccatcaggggactttccctggtcccctgaatctcttccagaaaccatggaaatgcaa
tccatgacccagagttctggcattcgctccccaagtgggcgtctggctcctcctctcaat
gtaactgcccaggcaaccggccccaagaacatacgcatgctgtggattccccccccaggc
aagcccagcggctacaaggtgaagtattggatccagggagactcagagtctgatgcccag
gtcattgactgcaagggccccccagtagagctcagtaacctgtacccatactgtgagtat
gagatgcggatgtgtgcctacaactccatgggtgaagggcactactctgatgtggtacac
tgctgcacgctggaagatgtccccagcgaaccaggacgcctggccttcaatgtcatcaac
tccacagtcacacagctgagctgggcagagcctgcagagaccaatggggatatcaaagcc
tacgaggtcacctacacgcccatcactgaggacaaaaaagccatgggccccaccaagact
gtacggattgaagaccccaagaagagaatgattctgattgaaaacctggtggagtcccag
acatacctctacactgtacgagcacgcaatggggcaggctgggggcctgcaagagatgcc
accatcaacctggctacacagcccaagaggcccatgtcaatccctattattccagacatc
cccattattgatgccgaggccggggagggctatgacagcttcttgatgtacagcgctgac
gtcatgcggtctccaacaggcagtaagcaccccagtgtatctgacgaagatcagttcacg
aatgacaggtgggatcaaagctacctctaccagggaggaggtggctccctctctcggaca
acaaccacaagttacaagcagctgagtcccaacagccagatgagtttgaacagccagttc
gagacccgcaccattggaggaggggggtctaccattaccaaggagtaccacacaactcta
atgcctgggcaagaggtcccagggaggttacacacccacagagaagaagatactgggagg
agtggtttcaggacagacgaagtggttctcaggacgcggactgagatgaagggttactat
ggagacgatggtgtgcgggattctattgtcatggccgatgaaccgagtgggttctctgag
agtctaggactttctgggtacagcaagaagatggtaaactatagcatctcccacagcatg
aggggccacacccagtcagaggatgtgaacgatgtgttacagaacctgaacatgctgcag
gaccctagactgccccctggtgttccggacacacccacacgtctggtcttctctgcacta
ggccccacctccctgaaagtgagctggcaggagcctcactgtgagaaggcggttcaggga
tactgcatcctctaccagctcatcagcggaggtgatgtgaagcgaatcgacatcccaaac
cctgctgagaactcagtggtggtgaaggagctgctgccaaaccactcatatgttttcaag
gtgaaggcgcacagtgaggaaggctggggcccagagcgagagggggtcatcaccattgag
tcacaggtggaccccaacagccccctgagccctgtgccaggctctcccttcactctgagc
acaccaaatgcgcctggacctctggtcttcactgccctgagtcccgaagagctgcagctg
agctgggacaagccacgcaagcccaatggagacatcctgggctacatggtgacctgtgag
cagctccacggcggaggagaggtgcgctccttccaggtgaacggggacagctctgagacc
accctgactgtccccaacctgaacgaaaacatgccctacaagttcaaagttcaggccaag
accacccagggctttgggcctgagagggagggcatcatcaccattgagtcacaggacgga
gcgaacttctcccattttggtaaccagcagatgatgagaagggaagtatacaaccttcct
ggggagatcaccacaaagaccacccacacaacattcaatgacccctgtttctcagatgga
ggtatgataacctcacaacacacgtcggggggaactgtcacccggcaagtcactaaagaa
atcgtcagcagcatgaccatgatgtctggaggcaccgtcaccaaaaagatagagaagttc
tacaaggcttga
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