Polyodon spathula (Mississippi paddlefish): 121296269
Help
Entry
121296269 CDS
T07273
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121296269
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
121296269
3'-5' decay
Other 3'-5' decay factors
121296269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
zf-CCCH
AAA_19
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
PhoH
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_16
AAA_7
PIF1
MOV-10_Ig-like
AAA_5
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
121296269
NCBI-ProteinID:
XP_041077544
LinkDB
All DBs
Position
21:complement(29937136..29976365)
Genome browser
AA seq
1939 aa
AA seq
DB search
MADRRPEKSCEQACESLRRQEYEAVVKHCTEALFSLSHCPPSPSAVSQQGSDFVRNRVLL
YRIAALLQLKNYDQADEDCKHVLAVELARGEGLFPAVLRCMLMEGSLQVVSRILSRSLLG
EPLNGMVTKDLTRLRMLLSEIETATSTMGSGYVEDNEEDVQEGWQFRPPPRGVTSSEEYT
ICKRYLEQGICRYGAQCTSAHSQEELMEWQKRYASRLISLKQQQESAQSAGSYMEALIEK
WMNSLSPEKVLSEYLEGVSVEHSPDLLVTVTTKKSSQSWTFSLFCKPARMLYRMALLYDA
HRPHFSIGAVSAGDGANQIVQEVPDNCQEWVGGSIAQNGLDHCVYEVVVRFSTEIFGTFR
QTIVFDFGFEPVLMQRVMVDAASIEDLEHLMQARQQLLITAKRWDSSCKTIVEFEPNETS
DLERSLLSRYQIPLSADQLFTQSVLDKSLTKENYQARLHDLLYIEEIAQYKEVSKFNIKV
NLQLVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNSVLLLPLTKE
KSAQAPGTKEKVYEAAIEDKTKDFIFLRVCKDCCEELKLRPDRELQVELQFQLNRAPLCE
MHYALDRIKDNSIMFPNASLTPTIPWSPNSRQWDEQLDPRLNAKQKEAILAITTPLNFQL
PPVLIIGPYGTGKTFALAQAVKHILKQQDSKVLICTHSNSAADLYIKDYLHPHVEAGNPH
ARPLRVYFRNRWVKTVHPIVQQYCLISSTQYAFQMPQKEDILKHRVVVVTLSTSQYLCQL
DLEPGIFTHILLDEAAQAMECETIMPFALASNSTRIVLAGDHMQLSPFVYSEFARERNLH
VSLLDRLYEHYPAEYPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQPAHKDFYPLT
FFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGVVTPYADQVF
RIRAELRKKRMSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQMVEDSTE
DLDYGFLSNYKLLNTAITRSQSLVAVVGDPIALCSVGRCRKFWEQFIEICHENNSLHGIT
FEQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHHPATSNKQQQSPPKGKGPHQNQSEA
FPAEGFVQPNPSVLIGNPIRAFTPPLGTHPTLGKSPSPVQRIDPHTGAGILYVPAVYGGN
MVMSMPLSVPWPGYQGRFAVDPRLMTHQAAMAYNMNLLQAHGRGSPNPFGGSHPSPVGMS
QQQQEKEQEEQSRNGKMDGKSEHNSLHTPDRKAPDSKEKQVEPEAGQSRSPDPHASLNLP
NARLHRKENPVQRPLNFHLAPPNPPFPPHASVRQFPHQYPVPRPPFRVHQQQQQAPQNHL
PLQPGQVHQLTQQHSSQLSPAFQAGHNPPFFNPLPHRGLHSPNLEAMAPEQPAMVPEEMN
NAVRPVPQLNAPQPPPAQPSRLNSFVEENSEAAALGEALDMQGVGTLEALSQQTRLHQWN
EHNHFLQSNMAFPLHQQLAHPLAQQALRFPQQLIRGNWRLGNNAEEEPGPGYPRFPGLLR
EVPPSEQGELRDLPEMPPPQSRLLQYRQVQQVHPRNPGALPSPSSNSNHTGHFPGPYGDT
NRELEMINSQAFQQHQAQMFNNAFPMAAGHTTPPPVKYLLPEAQWPHPGLQQNHILGQGF
HYGMQQLAHRQEQVHLMQMHHQQQQQQKQQQQQHQQQAINQESFHPLSPQTVSAASLHNI
EEYEPRGPGRPLYQRRISSSSVQAFPEDSGAAPGGPGQCKELPDHRSNLSYNYPSPELWA
SANSSVPFQNIPCNGASRVVPHRDLLASKVVCSAEEHMKAEGVQQLSSSFNYTTLQHLGQ
FPPLMPSKQPSPEPCSSASGLQNPGMGKPPTMSYASALRAPPKPRPLPEQTKKSSDPLAL
LQEELSIGSSSVPRINEVI
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggaggccagagaagtcatgtgaacaagcatgtgaatcgttgcgaaggcag
gagtacgaggcggtggtgaagcactgcacggaggcattgttctccctcagccactgcccc
cccagccccagcgcagtgtcccagcagggcagtgacttcgtcaggaatagggtcctgctc
tacagaatcgcagcgcttttgcaacttaaaaactatgatcaagcagatgaagattgtaag
catgtgttggcggtggagctggctaggggggaaggcttgttccctgcagtgcttcgctgc
atgctcatggaaggaagtcttcaagtagtatcccgtattttatccaggtccctcttgggt
gaacctttgaatgggatggtgacaaaggatctgaccagactcagaatgctgctgtctgaa
atagaaacggcaaccagcacaatgggctcgggatatgtggaggataatgaggaagatgtc
caggagggctggcagtttcgccctcctccacggggagtcaccagcagcgaggagtacacg
atctgtaaaaggtatttggaacagggcatttgcagatacggggctcagtgtacgtctgca
cattctcaggaagaactcatggaatggcaaaagaggtacgcctcccgcctcatcagcttg
aaacagcagcaagagagcgcacagtccgctgggagctacatggaagcactcattgagaaa
tggatgaactcgttatcaccagagaaagtgcttagtgaatatttggaaggggtgagtgtg
gagcacagtcctgatcttttggtcactgtcaccaccaagaaatcgtcccagtcctggacc
ttctcactcttctgtaagcctgcaagaatgctgtacagaatggctctcctgtacgatgcc
caccggccccatttttccatcggtgctgtttctgctggagacggtgctaaccagatcgtg
caggaagtgccagacaactgccaggagtgggttggaggcagcatcgcgcagaatggactg
gaccattgtgtttatgaagtagtcgtccggtttagcacagagatcttcgggaccttccgg
cagactatagtctttgactttggcttcgagcctgtgctgatgcagagagttatggttgat
gctgcttcaatagaagatcttgaacatttgatgcaagcaaggcagcagctgctcatcact
gcgaaacgctgggattcttcctgcaagacgatcgtggagtttgagccgaatgaaacctct
gacctggagcgcagcctcctgagccgataccagatcccactgtctgctgaccagctcttc
acccagtctgtgctggacaagagcctgaccaaggagaactaccaagcacgcctgcacgac
ctgctgtacatcgaggagatcgctcagtacaaggaagtcagcaagttcaacattaaggtg
aatttgcagcttgtggcaagcttcatgctgacgggtgtctctggaggagccaagtatgcc
cagaatggacagctgtttggtcgcttcaagctcactgagacactttctgaagacactttg
gctggccgattggtaatgaccaaagtcaactctgttttgttactgccgctcactaaagaa
aaatcggcacaggcaccaggaaccaaagagaaggtttatgaagctgcgattgaggacaaa
acgaaggacttcatcttcctccgagtgtgtaaggactgctgtgaggagctgaagctgcgg
ccagaccgggagctgcaggtggagcttcagttccagctgaaccgcgctcctctctgtgaa
atgcattatgcgctggacaggatcaaggacaacagcatcatgtttccaaatgccagcttg
acgcccaccatcccctggagccccaacagcaggcagtgggatgagcagctggacccccgg
ctcaatgcgaagcagaaggaggccatcctggccatcaccacccccctgaacttccagctg
ccccccgtgctcatcatcgggccctacgggacagggaagacgttcgctctggcccaggca
gtcaagcatattctcaagcagcaggactccaaagttcttatttgcacccattcaaacagt
gctgcagacctgtacataaaggattaccttcacccacatgtagaagctggcaatccacac
gccagacctctcagggtatatttcagaaaccgatgggttaagacagtccatcccatagtc
cagcagtactgtttaatatcaagcacgcaatatgctttccagatgccacagaaagaagac
atactaaagcaccgggtggttgttgtcactttgagcacctctcagtatctgtgtcagctt
gatcttgagccaggtatctttacacacattctgttagatgaagcagctcaagccatggag
tgcgagaccatcatgccatttgcgcttgccagtaacagcacgagaattgtgttagcagga
gaccacatgcagcttagtccctttgtgtacagtgaattcgccagagagaggaaccttcat
gtgtcattgctggaccgactgtatgagcattaccctgccgaatacccctgcagaatactg
ctgtgtgagaattatcgctcccatgaagctatcatcaattacacgtctgaactgttctac
gatgggaagctgatggccagtggtaaacagcctgcacacaaagacttctacccgctaacg
ttcttcacagcaagaggagaggacgtgcaggagaagaacagcactgcctactacaacaat
gcggaggtgtttgagatagtggagagagtggaggagctgcggaagaagtggccggtcgcc
tggggtaaactggatgaagggagcatcggtgtggtcactccatacgcagaccaggtgttc
cggattcgggcagaactgcgcaagaagagaatgtccgacgtcagcgttgaacgagtgttg
aatgttcagggaaagcaattccgagtgctgttcctcagcacggtgaggacgaggcacacc
tgcaaacacaagcagactgcaataaagaggaaggagcagatggtcgaggactccacggag
gacctggactatggcttcctgtccaactacaagctgctcaacacggcgatcacaaggtcc
cagtccctggtggctgtggtgggagatcccattgccctctgctctgttgggagatgcagg
aagttctgggagcagttcattgagatctgtcatgagaacaacagcctccacggcatcacg
tttgagcagatcaaggcccagctggaggcgctggagctgaagaagacctacgtcctcaac
cctctggctccggagttcatccccagggccctgaggcagcagcaccaccctgcaacctcc
aacaagcagcagcaatctccaccaaagggtaaaggcccgcaccagaatcagagtgaagct
tttccagcggaaggatttgttcagcccaatccatctgttttgattggaaacccaatccga
gcgttcactcctcccctcgggacccaccctaccctgggaaaatcacccagcccagtccag
aggatagaccctcacactggggcaggcatcctctacgtgccagctgtctatggaggaaac
atggtcatgtcgatgcctttgtctgttccctggccggggtaccagggcaggtttgcagtg
gaccctcgtctcatgactcaccaggctgccatggcgtacaacatgaacctgctgcaagcc
cacggccgtggatcccccaaccccttcggtgggagccacccctccccagttgggatgagc
cagcagcagcaggagaaggagcaggaagagcagagcaggaacggtaaaatggatggaaaa
tctgagcataacagtctgcacaccccagacaggaaagcccctgattccaaagagaaacag
gtggaacctgaggctggacagagcagaagccctgacccccatgcaagcctaaatttacca
aatgccagactccacaggaaagaaaacccagtccagaggccgcttaacttccacctggct
ccccctaacccccctttcccccctcacgcctccgttcggcagttcccacaccagtaccct
gtcccccggcccccgttcagagtccaccagcagcagcagcaggcccctcagaatcacttg
cccctgcaacctggccaggtgcaccaactgacccagcagcattcatcccagctatctcca
gccttccaggccggtcacaacccccccttcttcaaccccctccctcaccggggcttgcac
tccccgaacctcgaggccatggctccggagcagcccgccatggtgccggaggagatgaat
aatgcggtgaggcccgttccacagctcaacgcaccacagccgccgccagctcagcccagc
cggctcaacagctttgtggaagaaaactctgaggcggcagccctgggagaagcgctagac
atgcagggggtcggcacgctggaagctctaagtcagcagacgagactgcaccagtggaat
gaacacaatcactttctgcagagcaacatggctttccctctgcatcagcagctggctcat
cccctagcccagcaggccctgcgcttcccccagcagctcatcagaggcaactggaggctg
ggcaacaatgcagaggaggagcctggaccaggataccccaggttccccggtctgctcaga
gaggtgcctccttcagagcagggtgagctacgggacctgccggagatgccccctccccag
tctcgcttgctgcagtacaggcaggtccagcaggtccatccccgcaaccctggagccctc
ccctccccttcgtccaactccaatcacaccggccacttcccaggcccctacggagacacc
aaccgggagcttgagatgatcaacagccaggcttttcagcagcaccaagcccagatgttc
aacaatgccttccccatggcagccggacacaccacccctcctccagtgaagtacctgctc
cctgaggctcagtggccgcaccctggcctgcagcagaaccacattctggggcagggcttt
cactatggcatgcagcagttagcccacagacaggagcaggtccacctgatgcagatgcac
catcagcagcagcagcagcagaagcagcagcagcagcagcaccaacagcaggccatcaat
caggaatcatttcacccactctcgccccaaacggtgtctgctgcttcacttcacaacata
gaagagtatgaacctagaggaccaggcaggccactgtaccaaagaaggatctcttctagt
tctgtgcaggctttccctgaagattcaggcgctgctccaggtggtcccggtcagtgtaag
gagcttccagaccatcgtagcaatctctcatacaactacccatccccagagctgtgggcc
agcgccaactcctctgtgccatttcagaacattccatgcaatggagccagcagagtagtt
ccgcacagggaccttttagcttcaaaggtagtctgttcagcagaggagcacatgaaggct
gaaggtgtgcagcagctgtcgagttcgttcaattacaccacgctgcagcacctcggccag
ttccccccgctcatgcccagcaagcagccgagtcctgaaccgtgcagcagcgccagcggg
ctgcagaaccctggcatgggcaaaccccccaccatgtcgtatgctagcgccctgcgggca
ccccccaaaccaagacccttgcccgagcagacgaaaaagagcagtgatcccctggccttg
ttacaggaggagctcagcataggcagctcatcggtaccaaggataaatgaagttatttaa
DBGET
integrated database retrieval system
