Polyodon spathula (Mississippi paddlefish): 121296274
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Entry
121296274 CDS
T07273
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121296274 (focad)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121296274 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
MMS19_N
Motif
Other DBs
NCBI-GeneID:
121296274
NCBI-ProteinID:
XP_041077554
LinkDB
All DBs
Position
2:complement(38905903..39001693)
Genome browser
AA seq
1804 aa
AA seq
DB search
MSEDLKKRLEFPNSLIQAQAVRSLTTAVLKEKCLSEKITQSSEQTPALELLWEKCCGDNV
VVRAACCDALVVLVAQDHADHQYVLNNILNLIPSARNVQGLINVIGKLLHMQAVDLSETG
KEKYSCPFTIRNPPHPYISVLENRPDCWPAILQQIAADIQQCREEREIACVSMLAPFLRY
LYCETSPLPEHAKLRQSLLKALLPSFETMEEREEPSAVDQQVLQLLFDLVPHFQVNNVTQ
VVESAMFLKELSWSFLAHAGFWRKELCQLSLQLLCACELSLRITGECSALIELIERNIDA
LSEDFASSQVIVGLSLLLLQAPANQQTPILKLALKIIAPSETQQLPAAAPILVMPLLQII
SSAAVMEVLSDSQISTSNQHLALALLHTVQGQDEGRKEDPLQLSFPISSWYSNTFITWNI
LDRLSQDRTAACDWLQSVQSTLPYNERVPEHVTLLVAFFIARKHGECFEIALKTAAELAR
ADPSQVPSLVPVLMFKLGKLSDPVLSHAVLYTLPALGTHKFCVSQILRALQVLGSTPKLR
AVVLRLMTSLWEMQDRVYPELQKFIGMLDKPSMSLGKEDQWEQILAKAASIRDICKQRPY
QHGGDMLAAISQVLNQCTKPDQATPSALVLQGLHELCRAEVVDIRSTWNALSPKLSCDSR
PLVVKALTELFSLIPVLAVKTEEYEKFKVQVVSILWSYAQSKDPVVASSGYKALSEFSAE
EHIILHLPEQARPEVKKPEADEEINEDEEEKEEDLSVPGMSYIKLLALTPPAVFSALQDF
LASLMKQEMVAMPRGVYHSALKGGALRTDQGKAVAGIPGFLLKTYEKNRQPGLKPGLAAG
LLLCYDLPIQTDRDGRPINRFLVSRGRSYQQMLTALIHEVNIQPSEWHRSILLPQGWRGF
MGRAYHALLQGRQAELEMQQRHGKESPEDIQYKQFTAWLWVRDQLTDAVKSAAKDSPVMQ
GNSILALTGLAVAVAKYENSLPSDVESTQEIGAEVLATKHWLVMVLDTLLSIVDSCYHPK
GRVFPWFQHKSYSGENTASAIARSCAALALSLMVPLLITSHKESIKEILNTLMAGLPGKP
HADESQAVQFHTGLALGMFLSSLYEERVSDVSDQKMNLLLMKSLDALEGCCFDTSLEYNT
GCILGVGLVLSLMSHGSQTESRVHVAVTLDKLLDSLKESSNQGRMLQEVLAYSVTCVSVS
AFSVGIIEANKAEEVMNKLRALTEQSQQTPGFALALGITVHGLSACGHGKAEDFYARLLP
AWIKILLTEGCPTMQRLAAVNGLVALVGSESSLIQLKSDAVQATQHQSRLNEVIRSITQI
ISFSGAIGLQSNASCLIGHVHLANLSSSQSRTSVPPDFGYLSEKSVIKAAVDYIIEAGKK
GPESIPPELVKVALEPVASVGSSFQYPPVNWAAILSPLMRLNFGEDIQQHCIELAVSQSQ
SSQSASMFLGMWLAPPLVYSVSLKTRGYLYQSFSLWMKHVPDDKLQSYVEALAVQHFTAE
NRLQYPGLCLSVLEGLVQAAKLPNPAQYCWGILCNTTEKIFQLLPNEIQDSEVGLYLEIA
KCLSEMADTEIDRITQVTKDNLMKTSLIRAYLVSQGRVPLLCLNDVIAAALGDSQKESVC
WMLLQSFYQARLAANPNTGVLNRMEWLLELMGHIRNVAYRSTPVEHEDIKQATDFLLQIF
SAAVVSWADHTSPLLLGVSAKWLLRKQETACTNSPKAVFSKHSADALSVQHCLTVLPYSI
QLLLAKEPWKGQTQKFIDWFIGIMEGPKDGLSETSIKTVKAALLALRFLPEFKKKAVWTR
AYGW
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagatttaaagaaaagattggaattccctaattctcttattcaggcccaggcc
gtgaggagtttaaccactgcagtgctgaaagaaaaatgtttgagtgagaagatcacacag
tcctctgagcagacccctgcgttggagctgctatgggagaagtgctgcggtgacaatgtg
gtggtgcgggctgcatgctgtgacgctttagtggtgcttgtggcccaggaccatgcagac
catcaatatgtgctcaacaacatcctgaatctcattccatctgccaggaatgtccagggt
ttaattaatgtgattgggaagttactgcacatgcaggctgtagacttatcagagactgga
aaagagaaatactcctgcccatttacaataaggaaccctccacatccatatatttctgta
ctggaaaacaggcctgactgctggccagccattctgcagcagattgcagctgatattcag
cagtgcagggaagagagagagatagcctgtgtttctatgctggcgccctttctcaggtac
ctgtactgcgagacctcacccttaccagaacatgctaagctgaggcagagtctcctcaaa
gccctgctaccttcatttgagactatggaggaaagagaggagccttctgcagtcgaccag
caagtactccaactgctgtttgatctggtcccacattttcaggtaaacaatgtgacgcag
gtcgtggagtctgccatgttccttaaagaactctcctggagttttctggcgcacgctggg
ttttggaggaaggagctgtgccagctgtcgctccagctgctatgtgcctgcgagcttagc
ctaaggatcacaggggagtgctctgctttgattgaactcattgagcgaaatatagacgcc
ctttcagaggacttcgcgtcatcacaggtcatagttggactgagtttactcttgctgcag
gctccagcaaaccaacaaactcctattctcaaactcgctttaaagatcattgccccttca
gagacacagcagttacctgcagctgctcccattctggtgatgccgttactgcagatcata
tcgagtgcagctgtcatggaggttttgtcagacagtcagattagcacctccaatcagcat
ctggcactcgctctcctgcataccgttcaaggacaagatgaaggaagaaaagaggaccct
ctacagctttcattcccaataagtagctggtacagcaacacattcattacctggaacata
ctggatagactgagccaagaccgaaccgcagcttgtgactggctacagtctgtccagtca
acactgccttataacgaaagagtccctgaacatgtcacgctgctcgttgccttcttcatt
gctagaaaacacggagaatgttttgaaattgctttgaaaacagctgctgaattggccaga
gcggacccgtcccaggttcccagtcttgttcctgttcttatgttcaagttgggaaagctt
tcagacccagtcttatctcatgctgtattgtacacactacctgctttgggaacacacaag
ttttgcgtttcccagatactgcgcgccttacaggtgctggggagcacacccaaactgaga
gctgtggtgctgcgtctcatgacctcactgtgggagatgcaggaccgtgtgtatccagag
ctgcagaagttcatcggtatgcttgacaagccatccatgtcactgggaaaggaggaccag
tgggagcagattttagccaaagctgcctctattcgggatatctgtaagcaaaggccttac
caacatggtggcgacatgctggctgcaatttcccaggtactaaatcaatgcactaagcct
gaccaggccaccccttcagctctcgttcttcaagggctgcatgagctctgtcgagcagag
gttgttgacattcgctcgacgtggaacgccttatctcccaagctgagctgtgattctcgc
ccacttgtagttaaagcgctgacagaactgttttccttgattcctgtgctagctgtgaag
actgaggagtatgagaaatttaaagtccaggttgtcagcatcctctggagctatgctcag
agtaaggatcctgtggtagcaagcagtggctacaaagctctttctgaattcagtgctgaa
gaacatataatacttcatcttccagagcaggccagaccagaggtcaagaaacctgaagcc
gacgaagaaattaatgaagatgaggaggagaaggaagaagatctttctgtaccaggcatg
tcctacatcaaactcctcgcactaacacctcctgctgttttcagtgcacttcaagacttt
ttggcatctctcatgaagcaggagatggttgcaatgcctcgcggagtgtaccactcggct
ctcaaaggtggagccttgcgcactgaccaggggaaggctgtagcagggattccagggttc
ttgctaaaaacctatgaaaagaacaggcagccagggctgaaacctggacttgcagctgga
ttgttgctctgctatgatcttcccattcagactgacagggatggaaggcccatcaatcga
tttcttgtcagcaggggacgcagctatcagcagatgctgacagctcttattcatgaggtg
aacatccaaccatccgaatggcaccggtcaatcctcttgccgcagggttggcgtgggttc
atgggcagggcgtaccatgctctgttacagggtagacaagcagagcttgagatgcagcaa
agacatggcaaagaaagtcctgaggacatccaatacaaacaatttacagcttggctctgg
gtcagagaccaactcaccgatgcagtgaaatcagcagctaaggacagcccagttatgcaa
ggaaactcaatattagctcttactgggcttgctgttgccgtagccaagtatgagaacagc
cttccgtcagatgttgagagcacacaagagattggtgccgaagtgttggcaactaagcac
tggcttgtcatggttctagacacactgctgagtattgttgacagttgctatcaccccaag
ggccgtgttttcccctggttccaacataaatcgtactctggagagaacacagccagtgcc
attgctcgctcctgcgctgccctggctttgtctctgatggtgccactgttgatcacatcc
cacaaggagagcattaaggagatcctaaacacactcatggcagggttgccagggaaacca
catgcagacgagtcccaggctgtgcagttccacacaggtctcgctttgggaatgtttctc
tccagtttatacgaggagcgtgtcagtgatgtctctgatcagaaaatgaatttgctcctg
atgaagtcactggatgcgctggagggttgctgttttgacaccagtttggagtacaacact
ggatgcatcttgggagttggtcttgtgctttccttgatgagccacggcagtcagactgag
tcccgtgtgcatgtagctgtgaccttggacaagttacttgacagcctgaaggagagcagc
aaccagggcaggatgctgcaagaggttttggcctattcagtcacttgtgtcagcgtgtct
gccttcagcgttggcatcatcgaggccaacaaagcagaagaagttatgaataagcttaga
gccctgacagaacaaagtcaacagaccccggggtttgcattggctttaggtataactgtt
catgggttatcagcctgtgggcatggtaaagctgaagacttttatgctcgacttctgcct
gcctggataaaaatcttactgactgagggatgtcccacaatgcaacgtctggcggctgtg
aatggtttggttgctctggtgggatctgaaagttcccttatccagctgaagtctgatgct
gtacaggccacccagcatcaaagccggcttaatgaggtcatcagatcaataacccagatt
ataagtttctcaggtgcaattggactgcagtcgaatgcctcctgtctcataggacatgtc
catcttgcaaacttgtcatcaagtcaaagcaggacttcagttcctccagattttgggtac
ttgtctgagaagagtgtcatcaaggctgctgtggattacatcatcgaagctggaaagaaa
ggtcctgagtccatccccccggagctggtgaaggtggctctggagcctgttgcttcagtg
ggcagcagtttccagtatccacctgtcaactgggctgccattctgtctcccttgatgagg
cttaactttggtgaagacatccagcaacactgcattgagctagctgtgagccaatcccag
tcatcccagagtgcctctatgtttctaggaatgtggctggcaccacctcttgtttacagt
gtcagtctaaagacaagaggctacctttaccagtctttttccctttggatgaaacacgtc
cctgatgacaaactgcagtcatatgtggaggcgttggcagttcagcacttcacagcagag
aacaggctgcagtacccaggcctgtgcctgtcagtcctggaagggcttgtccaagccgca
aagctgcccaacccagcgcagtactgctggggcatactctgcaacaccacagaaaaaatc
ttccagctgctaccaaatgaaattcaggacagtgaagtcggtctctatttggaaattgct
aaatgcctgtcggagatggcagacactgaaattgacagaataactcaagtcaccaaggat
aaccttatgaagacatccctcatcagggcctacctggtctctcagggcagagtcccactg
ctgtgtttgaatgatgtcattgctgctgccttgggtgatagccagaaagagtcagtctgc
tggatgttgctacagagtttttatcaggcacgccttgcagccaacccaaatacaggagtt
ctaaacagaatggaatggcttttagaattaatgggccatatcagaaatgttgcttatcga
tcaacccctgtggagcatgaagatatcaagcaggcaacagatttccttcttcagatattt
tctgctgctgttgtgtcatgggctgaccatacctcacctttgcttcttggagtcagtgcc
aagtggttgttaaggaaacaagaaactgcatgtaccaacagccccaaagctgtttttagc
aaacactcagctgatgcactttcggtgcagcattgcttaacagttcttccatacagcatt
caacttttgctggctaaggaaccttggaaaggccaaacccaaaagtttatagactggttc
attggaataatggaaggtcctaaagacggtctgtcagaaacgtctattaaaactgtaaaa
gctgctcttttagccttaaggtttctccccgagttcaaaaagaaagcagtgtggaccagg
gcttacggctggtag
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integrated database retrieval system
