Polyodon spathula (Mississippi paddlefish): 121296314
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Entry
121296314 CDS
T07273
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04210
Apoptosis
pspa04218
Cellular senescence
pspa04620
Toll-like receptor signaling pathway
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa04623
Cytosolic DNA-sensing pathway
pspa04625
C-type lectin receptor signaling pathway
pspa04920
Adipocytokine signaling pathway
pspa05132
Salmonella infection
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121296314
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121296314
04218 Cellular senescence
121296314
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121296314
04621 NOD-like receptor signaling pathway
121296314
04622 RIG-I-like receptor signaling pathway
121296314
04623 Cytosolic DNA-sensing pathway
121296314
04625 C-type lectin receptor signaling pathway
121296314
09152 Endocrine system
04920 Adipocytokine signaling pathway
121296314
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121296314
09171 Infectious disease: bacterial
05132 Salmonella infection
121296314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121296314
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121296314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121296314
NCBI-ProteinID:
XP_041077665
LinkDB
All DBs
Position
2:39528469..39565532
Genome browser
AA seq
984 aa
AA seq
DB search
MADEASYLVGQGHHMFEIDQFSTLMGMEPFTFPNMAATNSLRIADGPYLQIIEQPKQRGF
RFRYGCEGPSHGGLPGASSEKNRKSFPQVKICNYQGPAKIVVQLVTHSKEVRLHAHSLVG
KQCDKGICVADLQPKDTSISFPNLGILHVTKKNVSKTLEDRMIQAYRLGYNYGISIHPEI
NCLQTEGRVSRELTDHQRSLIANAAISQTKEMDLSVVQLMFTAFLPDSDGGFTRRLDPVI
SDPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDETGGYWE
AFGDFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQVID
KEEVQRKRQKTLPSFPDYGAGAGGGGGGMYGGAGGAPGTGGAGFNYQGYPNYNNFGSRYP
YSGGPSSSGTGMKHASKGPADDGDDSDLDDDSEAQCNPRISCKEKSEDMQKASEEESTSD
GVDQGPAEDSLKTAVTEVDLLFAEKAMQLAKRHADALFSYAVTGDVRMLLAVQRPLMAVQ
DENGDTGLHLGVIHHRSETAKNLIEVISCIPGEDVINMRNDLYQTPLHLAVITQQADAVE
ALLKANADLSLTDRHGNTALHLAAKQGDSEILSLLLQHQEAAKLINLPNSEGLSALHLAV
LANSLPSLRELISYGVDVEECEQSSGRTALHLAVEQENISLAGSLLLEGSAHVDSSTYDG
STPLHIAAGRGSVKMTALLMAAGANAHKENCEPLYDTDDRDCEEEVGDEDEGFVPGTTPL
DMALTDEVFDLLNGKQYEPKLKSSSLPPQGDMNDLSEEVKQELYKVLELPGQSWEVLAQQ
LGLGVLNSAFKLSPSPAKTLLESYQVSGGTIMELLDGLKSVGNSEAVEIVQKALCGATHE
NEDTPAPDSPALAEQQTGVQLPNRLLDLKNYSSEDNSACDSGVETSFRKFSLYSSESLNC
TPEELGLSGISKVPKQGFAVEGEL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaagcttcttatctggtggggcaagggcaccatatgtttgaaatagaccag
ttttcaactttaatgggaatggagccttttacttttcctaacatggcggccaccaattca
ctacgaatagcagatggaccatacctccaaattatagaacaacctaaacagagaggcttt
cgtttccgctacgggtgtgagggaccatcgcatggtggattgcctggcgcttcaagcgag
aagaacaggaagtccttcccacaagtcaagatatgcaactatcagggaccagcaaagatc
gtcgttcagctcgtgacccattccaaagaggtacgcctgcatgcgcacagcctggttgga
aagcagtgtgacaaagggatatgtgtggctgacctgcaacccaaagatacaagcattagt
tttccaaacctgggtattcttcatgtcactaaaaagaacgtaagcaagaccttggaggac
agaatgattcaggcgtacagattgggctacaactacggcatctctattcacccagaaata
aattgtttacagactgaggggcgggtatcaagagaactcacagatcaccagagaagcctc
attgctaatgctgccatcagtcagacaaaggagatggatctcagtgtggttcagctgatg
tttacagcgttcttgcctgacagtgatggtggattcacaaggcggctggaccccgtcatt
tcagatccaatttttgacagcaaagccccaaatgcctctaatttaaagattgtaaggatg
gaccgcacagctggctgtgttactgggggtgaagaggtctatctgctttgtgataaggtt
caaaaagatgacatccaggttcggttctatgaggaggatgaaacaggaggatactgggaa
gcttttggagatttttcacccacagatgtgcacagacagtttgctatagtctttaagact
ccaaaataccgggacctcaacttgcaaaaaccaacctctgtgtttgtccagttgaaaaga
aagtctgacaatgagacaagtgaaccaaagcccttcacttaccatccacaggttatagat
aaggaggaggtccagaggaagcgtcagaagacactgcccagctttccggattatggtgct
ggagctggtggagggggaggagggatgtacggtggggcaggaggggctccgggaacagga
ggggctggatttaattaccaaggatacccaaactataataattttggaagccgctaccca
tattctggtggtcccagcagctccggtactggaatgaaacatgcttcgaagggccctgca
gatgatggcgatgacagtgacttggatgacgatagtgaggcccagtgtaatccgaggatt
agctgcaaggagaagtccgaagacatgcaaaaagcctctgaggaggagagtacatcagat
ggagtggatcagggccctgctgaagattcactgaagacggcagtcactgaagtcgaccta
ctattcgctgaaaaggctatgcagcttgctaagcgacatgcagacgcactctttagttac
gcagtcactggggatgtgaggatgttgctggcagttcagagacccctcatggcagttcag
gatgaaaacggagataccggcttgcaccttggtgttatccaccacagatctgagactgct
aaaaatcttattgaagtgatttcctgtattcctggggaggatgtgatcaacatgaggaat
gacctctaccagactcctttacacttggctgttattacacagcaagcagacgccgtggaa
gctttgttaaaagccaatgccgatttaagtctcacagatcgccatggcaacacagcttta
cacctggctgccaagcaaggagattctgagattctgagccttctactccaacaccaggaa
gcagctaaactgattaatcttcctaacagtgaaggtttgagtgctcttcatttggcagtg
ctggccaatagcttgccgtctcttagagagcttatctcttatggagtggatgttgaagaa
tgcgagcagagttcaggtcgaactgcactacatctggcagtagagcaggagaacatctct
ttagctgggagccttctccttgaaggcagtgctcatgtggattcctctacatacgatggg
tctactcctctccacatagcagctggaaggggctccgtcaaaatgactgcgcttctcatg
gcagccggagccaatgcacataaagagaactgtgaacccctgtatgacactgatgacaga
gactgtgaagaggaggtgggggatgaggatgaagggtttgttccagggaccacccctttg
gacatggcactcactgatgaggtctttgatctactgaatggaaaacagtatgaaccgaag
ttaaagtcttccagtttaccgccacaaggtgatatgaatgatctcagtgaagaagtgaag
caggagctgtacaaagtcctggagctgcctggtcagagctgggaggtcctggcacagcag
ctaggattaggagtcctaaacagtgccttcaagttaagcccatcaccagccaaaacactg
ctggagagctaccaggtttctggtggtactataatggaactgctagatggtttaaaatca
gtgggtaactctgaagctgttgaaattgttcagaaagctttatgtggtgcaacgcatgag
aacgaggacacccctgctccagactcgcctgctcttgccgaacagcagacaggtgtccag
cttccaaaccgactgttggatctcaagaactacagcagtgaagacaatagcgcatgtgac
agtggggtagaaacatcttttaggaagtttagcctctattcttctgaatcgctgaattgt
actccagaagaattgggattatctggaatatccaaggtccctaagcaaggctttgctgtt
gagggagaattataa
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