Polyodon spathula (Mississippi paddlefish): 121296394
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Entry
121296394 CDS
T07273
Name
(RefSeq) transmembrane channel-like protein 6 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121296394
03037 Cilium and associated proteins [BR:
pspa03037
]
121296394
Transporters [BR:
pspa02000
]
Other transporters
Pores ion channels [TC:
1
]
121296394
Cilium and associated proteins [BR:
pspa03037
]
Other cilia and associated proteins
Stereociliary proteins
121296394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
121296394
NCBI-ProteinID:
XP_041077834
LinkDB
All DBs
Position
21:complement(26676794..26697893)
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AA seq
842 aa
AA seq
DB search
MARSISFHLDLSEAEEGQQSLDFSPYDENIVHDSFNELIEEQSQSQDGFEVFEMEDMADR
GRENPAFLASPLHGRSNREQRREEEPLLSENFSPVTLRVLSAMPSRTIGRNRGAIISQYY
NRTMKLRRRRSRPSIRDLSRSARPSICGYRVETDPEAAAEEENRQHLIDNLQNLSVSDRG
RMLKTMPLSLLEKKSLRHACNSKGFPRSRNQIPCCSQLKYYLIIGFRHGWYSLLSFLHSL
QLWHVALKKLSGRFGTGVLSYFVFLKTLLLFNVFLLLVNVLFLAVPQAAHPPSEQTHRPP
FQGLEVLTGAGYFTDTVLYYGYYTNSTVNGCGPDRNGSGCTVGQNSLDNNTRMPYNIPLA
YFFIIGVSFFITCIILVYSMSKSFGQSYRIDNPHGDLAMKMFCSWDFKVIKKSSVKLQCE
NICTQMKELLSELARASGQQTLLQRLARMMVHLLAWVMSLGSTVACAMGIYYFSTYMHKD
LTTRVSRNETLIHVEASLLALPVVVSTVNLLMPGLFNAAAWMEQYDAPSTQAYVAICRNL
LLKMSVLGVLCYHWLGTTISGHVTLSKRVRQNGSTGGLECWETFVGQELYRFLLMDFIFT
ILDTIFGEFVWRLFSQKVLKRKRKPVFDIARNVLELIYGQTLTWLGVLFSPLLPAIQVIK
LVLLFYIKRTSLMMNCQAPSKPWRASQMTTIFITLLCFPAFLGAAVAVTYTIWTIKPSEG
CGPFRTLDTMFESGKIWVRQLEEINSNFSWFTWIHKYLVENPFFLFAAAGVLLIVIYFHA
QVVGGQRKIISLLQEQIDNEGEDKKFLITRLQDIYEKKRPISVRFKQKERRVSLKSLPCG
SP
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcccggagcatcagctttcaccttgacctctcagaagctgaggaggggcagcaatcc
ctggacttctctccatacgacgagaacattgtccacgactccttcaatgagctgatcgag
gagcagagccaaagtcaggatgggtttgaggtcttcgagatggaagacatggctgacagg
gggagagaaaacccagccttcctggcatctccgctgcacggccgcagcaacagggagcag
agacgggaggaagaaccgctgctgagtgaaaacttctccccggtcaccctgagagtgttg
tctgccatgccgagccgcaccatcggccgcaatcgcggagcaatcatctcgcagtactac
aaccgcacaatgaaactgcgacgccgacgaagccggccgtccatccgggacctgtcccgc
tccgcccgccccagtatctgtggataccgagtggagacggacccagaggcagcagcagag
gaagaaaatagacaacacctgatcgacaacttgcagaacctctctgtgagtgataggggg
cgtatgctgaaaaccatgcccctcagcctgctggagaagaagagtctgagacatgcctgc
aattcgaaggggtttccccgttccaggaaccagataccctgctgcagtcagctcaaatac
tacctcatcatcggttttcgtcatggctggtacagtttgctctccttcctgcactctctg
cagctgtggcacgtggccctgaagaagttaagcggacgcttcggcactggcgttctctcc
tacttcgtcttcctcaagacgctactgctcttcaacgtcttcctcctcctcgtcaacgtt
ttattcctcgctgtcccacaggcagcccacccgcccagcgagcagacccaccgccccccc
ttccaggggctggaggtgctcaccggggctggctatttcacagatacggtcctgtactat
ggttactacaccaactccactgtgaatggctgcggtccggatcgtaacggctcggggtgc
accgtgggtcagaacagcttggacaataacacccgcatgccctacaacattccccttgca
tacttctttatcattggggtctccttcttcatcacctgcatcattctggtctacagcatg
tccaagtccttcgggcagagctaccgcattgacaaccctcacggggacctcgccatgaag
atgttctgttcctgggacttcaaagtaattaagaagagctccgtgaagctccagtgtgag
aatatctgcacacagatgaaggagctgctctctgagctggctcgggcatcaggacagcag
actctgctacagaggctggcaaggatgatggtgcacttgctggcctgggtcatgtctctg
gggagcaccgtggcgtgtgccatgggcatctactacttctccacatacatgcacaaggac
ctgaccacgagagtgtctcgtaacgagaccttgatccacgtggaggcgagcctgctagcc
ctgcccgtggtggtgtccacagtgaacctgcttatgccgggcctcttcaacgcggccgcg
tggatggagcagtacgatgcacccagcacacaggcctacgtcgccatctgcaggaacttg
ctgctgaagatgtctgtgctgggagttctgtgttaccactggctgggaacaaccatcagc
ggtcatgtgactctttcaaaacgggttcggcagaatggctctactggggggctggagtgc
tgggaaaccttcgtgggtcaggagctgtaccgtttcttgctgatggatttcatctttaca
atcttggacaccatcttcggcgagtttgtgtggaggttattttctcagaaagtgctcaag
aggaaaaggaagcccgtgtttgatatcgccaggaacgtgctggagctcatatacggacag
actctcacctggctaggagtgctgttctcaccgctgcttcctgcgatccaggttattaaa
ctggttcttttattttacattaaaaggaccagcctaatgatgaactgccaggcccccagc
aaaccctggagagccagtcagatgaccaccatcttcatcaccctcctgtgcttcccagca
ttcctaggggcagccgtggctgtcacctacaccatttggacaataaagccctcggagggg
tgtgggcctttcaggacgctggacaccatgttcgagtcagggaagatctgggttcgacag
ctggaggaaataaattccaatttctcctggttcacctggattcacaagtacctggtggag
aaccccttcttcctgttcgctgctgctggcgtccttctaattgtgatttatttccacgcg
caggttgtgggtggacagaggaaaatcatctctttgttacaagagcaaatcgataatgag
ggagaggacaagaaattcctgatcacgcgcctgcaggatatttatgagaagaagcggccc
atttctgtgcggtttaaacaaaaggagagaagggtaagcttgaaatcattgccctgtggt
tccccctga
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