Polyodon spathula (Mississippi paddlefish): 121296416
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Entry
121296416 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9-like isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121296416
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121296416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
GH101_dom-5
MUN
Motif
Other DBs
NCBI-GeneID:
121296416
NCBI-ProteinID:
XP_041077891
LinkDB
All DBs
Position
21:1000768..1066424
Genome browser
AA seq
2979 aa
AA seq
DB search
MTDPMMDFFDDANLFGGGLEGLADDSFAQTDPVSLVDELGLGAEFEPLQVEPLGQVKQPG
NPPSQPGLCFEQQMSQFEPLKGHHHHHRQQGGQPFSIPNESTNNGLPRHSQYTASPLHQP
SQSNGLFPDMVDGSPMWGNQNEAQFHQNHGNLQSLQQQQQHSKSFAAHDDFSLFQTLPPQ
QQQQQHRPPHALQRQQQQQQPLLNKNSPFNPGGQEAMSQSSSFLEVHSSSPVGNVHQPDR
LSSRPAPCQTPPAVSVHHFSNPVASVSLSFPGQSSSSTLNLPACSVNASSLFPPAQCSFS
GTSNGGTLLSSTPGSGHSLGVSDFPGGNRAFPLMAGTNGGASLQPSRYPQAINPSCENAF
QAMHSGLGSFSGSPMSTEDMGCYPAVVSRSSDTLGHAIPPAEPPLSSSNGFPTLEEHLLQ
QVQSHSEAFPELDTDGLLEEDLLPQFEAAFGPQDPSCMQEETQVDSGSNNSWPDEGGLPG
DFQQQPPSSKNTNGSGSQSKLHSPHVRSSPVHSERRLKKAAAATAVMMEVLVEDKQEKAN
RIISEAIAKAKERGEKNIPRVMSPESFPSSSSEARQERKAARRLKSKPKPKDKLSRKAKS
GPSSKSKQKTKIGSPYSKRDSSSSSSSSKLPHCRSLSVSGAGTMTPKPTVLRPINSTSSP
HKKIIIKFGKKKKRKSESSDEASDSEPTPRRFSKDSDSKRRSNRQVKRKKYAEEGECKIS
DEEKKVTLKVKRTGPAPRKDHALQLFVENPSEEDAAVVDKIMSSRRVKKEVTPGVMAEVE
EFYVKYKNYSYLHCEWATEQQLLKDKRIHLKIKRFKIKQAQRAHFFADMEEDPFNPDYVE
VDRVLDVSYCEDKDTGEPLIYYLVKWSSLPYEDSTWELKEDVDQFKIEAFELLQAARADP
RRRERPPANMWKKREESREYQNGNQLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQ
SITFLEEIYLTGIRGPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSMISRQMLQQYEMY
CRDSQGRVVRGAYKFQAIITTFEMILGGSPELNAIEWRCVIIDEAHRLKNKNCKLLEGFK
LMNLEHKVLLTGTPLQNTVEELFSLLHFLEPSHFPSESTFMQEFGDLKTEEQVQKLQAIL
KPMMLRRLKEDVEKKLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGVGQANVPNLL
NTMMELRKCCNHPYLIKGAEEKILEDFREIYSPASLNFHLQAMIQSAGKLVLIDKLLPKM
KAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVF
LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQDKAVKVYRLITRNSYER
EMFDRASLKLGLDKAVLQSMSGRENSAGGQMQQLSKKEIEDLLRRGAYGAIMDEEDEGSK
FCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEID
MEALNDRNSLVIDTPRVRKQTRPFSATKEELAQLSEGESEGDDKPKLRRPHDRLSGYGRT
ECFRVEKNLLVYGWGRWRDILQHSRFKRQLNEHDVEVICRALLSYCLLHYRGDDKIKSFM
WDLIAPNEDGQTRELQNHLGLSAPVPRGRKGKKMKTQPSTFDIQKAEWLRKHNPEQLLQD
EGYKKHIKHHCNKVLLRVRMLYYLKQEVIGDHFQKVIDGADSSEIDMWVPEPDHSELPAN
WWDADADKNLLLGVFKHGYEKYSTIRGDPALSFLERVGKPDEKAIAAEQRANDYMDGDGD
DPEYKPAPALLKDEMEDDASSPGELIIADGNGDGQMMMMMEGDTIYWPPPSALTTRLRRL
ITAYQRNTKNRQIQQIQQIQQVHPVQPSALHPAHQEPINPKIAAKIERQQRWTRREEADF
YRVVSTFGVVFDPEQGRFDWTKFRAMARLHKKTDESLQKYLCAFSAMCRRVCRLPPKDGE
PVDPSISIQEITEERASRTLYRIELLRKVREQVLRHPQLYERLQLCHPSQDLPVWWETGT
HDRDLLIGAAKHGVSRTDYHILRDPELSFMMAQRNYSQNKGLQSRIPTPLLQQQQQHQMG
LAGSPLTLQPRLEDPKAGQPEDSRQKGERTDRLKEEPHTSEEEGFGSAGESKVKLEPWSP
QGDACVSLGVLDSKEEGERRMVAARTEPLTPSSVVKKQKRSSKRGRGGGGGSDSDSDGSS
SSSRSSSSSSSSSCSRSGSSSSSSSSSSSSSSCSSGSSSSSSSSSSSSEDSDSDSEDRKE
NAEVTPVVKGFDEDSVASLSTTHDETQDSFLTDNGAPSSAHVFQGGYMLAASYWPKDRGM
INRLDSICQAVLKGKWPTARKSYEGTAVASFYTTKLLDSPGADAGLQGLPAPRDELALSS
QMSKVKKHVREKEFTVKINDQEGGLKLTFQKQAPPQKRPLDSEEGPLGQQQYLARLQELQ
SASDTSLADFSKSLPATAAAASSHLRPNGVLDGQPAVKKRRGRRKNVEGMDLLSMTKNKP
APNHLSPGDGNGSKDSSCVNPALALNQPPGALDMEIRVPVINLKDGTRLAGDDAPKKKDL
EKWLKDHPGYVADVGAFIPGLGKMTFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQVINR
RNARKVGGAFAPPLKNLCRFLQENREYGVPPEWAEVVKHSGFLPESMFDRILTGPVVRQE
ASRRGRRPKSDVSNAVAGNSGPAMPVSPLLTNGLISGMDLSSLQALQQNLQSLQSLQLTA
GLMGLPAGDANNLAAMFPMMLSGMTGLPNLLGMSGLLGTCPEGPGTEDRKASSADPSTAE
AKGDRTEGPLAGSGEASMTNSPSTSTAAPLSASAVASAAAASNHPLALNPLLLSSMLYPG
MLLTPGLNLPVPPVSQSNLFDMQQSANSDSSAGKASEGAAQENPDEPQEEESGESERGLG
GVDPQRDNSTEEGSEKGASSSSSESGSSSSSSDDTDSSD
NT seq
8940 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcccatgatggactttttcgatgatgctaatctcttcggagggggattggag
gggctggcggacgacagctttgcacagacggacccggtttctctggtggatgagctgggc
ctgggcgcagagtttgagcctctgcaggtggagcctctcggccaggtgaagcagccgggg
aacccaccttcccagcccggcctctgctttgagcagcagatgagtcaattcgagcccttg
aagggtcaccaccaccaccaccggcagcaaggggggcagcccttctccatccccaacgaa
agcaccaacaatgggcttccccggcactctcagtacactgcttccccgctgcaccagcca
agccagtcgaatggattgttcccagacatggtggatggaagcccgatgtgggggaaccag
aatgaagctcaatttcaccaaaaccacgggaacctccagtctttgcaacagcagcagcaa
cacagcaaaagctttgcagcacatgatgacttttccttatttcagaccctccccccgcag
cagcaacagcagcagcaccgccctcctcacgcgctacagcggcaacaacaacagcagcaa
ccattgctcaacaaaaacagcccgtttaaccctggtggacaggaggctatgagccagtct
agctcctttctggaagttcacagctcctcgcccgtgggcaacgtccaccagccagacagg
ctgtcgagccgcccggctccgtgtcagacccccccggctgtttctgtgcaccacttctcc
aaccctgtggcgagcgtgtccctgtctttcccgggacagtcgtcgtcctccaccttgaac
ctgcctgcttgctccgtgaatgccagctctctgttcccacctgctcagtgttccttctcc
ggcacctcaaacgggggcacgctgctgtcttccacccctggcagtggtcactcccttggt
gtgtccgacttccctggagggaacagagcctttccgctgatggcagggaccaacggggga
gcgtcgctgcagccgagtcggtacccgcaggctataaaccccagctgtgagaacgctttc
caagctatgcattcggggctgggaagcttcagcggctctccgatgtctacggaagacatg
ggctgctacccagccgtggtcagcaggtcctccgacactctgggacacgctatcccccct
gcggaaccccctctatccagcagcaatggcttccccacgctggaggagcacttgctccag
caggtgcagagtcacagcgaggcatttccagagctggacacggacggcctcttggaggaa
gacctgctgccccagtttgaggctgcctttggcccacaggatcctagttgcatgcaggag
gagacgcaggtcgattcaggttccaacaactcctggccagatgagggtggcttgccaggg
gacttccagcaacagcccccttcctcgaagaacactaatggttcaggctcccagtccaag
ctgcacagcccccacgtgaggagcagcccggttcactctgagaggaggctgaagaaggca
gcagcggcgacggctgtgatgatggaggtcctcgtggaggacaagcaggagaaggccaac
cgcatcatctcggaggccatcgccaaggcgaaggagcgcggggagaagaacatcccgcgc
gtcatgagccccgagagcttccctagctcctccagcgaggcccggcaggagcgcaaggcg
gcacgccggctcaaatccaaacccaaacccaaggacaagctctccaggaaggccaagagc
ggcccgtcctctaaatccaaacagaagactaaaatcggctccccctactcgaagagggac
agcagcagcagcagcagcagcagcaagcttccccactgccgcagcctgtcggtgagcggc
gctggtacgatgacccccaagcctacagtattgagacccataaactcaacgagctccccg
cacaaaaaaattatcatcaaatttggtaagaagaagaagaggaagagtgagtcctcggat
gaagcgtcggacagcgagccgaccccgcggcgcttctcaaaggactcagactcgaagaga
agatctaatcggcaagtgaaaagaaaaaaatacgcagaagagggagagtgcaagatatca
gacgaggagaagaaagtgacgttgaaagtgaagaggaccggccctgcaccccgcaaggac
cacgctctgcagctgttcgtggagaacccgagtgaagaagatgcagcggtagttgataaa
atcatgtcttcgaggagagtgaaaaaagaggtcacgccaggagtgatggctgaagttgaa
gagttttacgtaaaatacaagaactactcctatttgcattgtgaatgggccacagaacaa
cagctcttaaaggacaagaggattcatctgaagattaaacgattcaagattaaacaagca
cagagggcccacttctttgccgatatggaggaggatcccttcaacccagactatgttgag
gtagatagagtgctagacgtctcctactgtgaggacaaggacacaggcgagcctttgatt
tattacctggtgaagtggagctcgctgccttatgaagacagcacttgggagctgaaggaa
gacgttgaccagtttaaaatcgaggcgtttgaactactgcaggcagccagagcagaccct
cgaagaagggagcgacctccagccaacatgtggaagaaaagagaggaatccagggagtat
caaaacggaaaccagctcagggactaccagcttgaaggagtgaactggcttctcttcaac
tggtacaacagacgaaactgtattcttgctgacgaaatgggcctcggcaagaccatccag
tccatcacattccttgaagaaatctacctgacgggaatccgggggcccttcctgatcatc
gcccccctgtccaccatcgcaaactgggagcgggagttcaggacctggacccacctcaac
gttatcgtctaccacggcagcatgatcagccggcagatgctgcagcagtacgagatgtac
tgcagggattcccagggccgcgtggttcgtggagcgtacaagttccaggccatcatcacc
acgttcgaaatgatcctcgggggctccccggagctgaacgccattgagtggcgctgtgtg
atcatcgacgaggctcacaggctgaagaacaagaactgcaaattactggaggggttcaag
ctcatgaatctggagcacaaggtgctgctaacaggaaccccgctgcagaacacagtggag
gagctcttcagcttgctgcacttcctcgagccatcccacttcccctccgaatccaccttc
atgcaggaattcggagacctcaagaccgaggaacaggtccagaagctccaggccatcctg
aagcccatgatgctgcggcggctgaaggaggacgtggagaaaaagctggctcccaagcag
gagaccatcatcgaggtggagctcaccaacatccagaagaagtactaccgagccatcctg
gagaagaacttctccttcttgtcgaaaggcgtgggccaggccaacgtcccaaacctgttg
aacaccatgatggagctgaggaagtgctgcaaccacccctacctcatcaaaggggcggag
gagaaaatcctggaagatttccgtgagatatacagcccggcttccctgaacttccacctg
caggcgatgatccagtccgcagggaagctggtcctcatcgacaagctgcttcccaagatg
aaggccgggggtcacaaggtgctcatcttctcccagatggtgcgctgcctggacatcctg
gaggactacctcatccagaggaggtacctgtacgagcggatcgacggcagggtgcggggg
aacctgaggcaggcagctatcgatcgattcagcaagcccgactcggaccgctttgtgttc
ctgctgtgcaccagggctggcgggctggggatcaacctgactgcagccgatacctgcatc
atcttcgactcggactggaacccccagaacgacctgcaggctcaagcacgctgtcacagg
attggtcaggacaaggcggtgaaggtgtacaggctgatcacccgcaactcctatgagagg
gagatgttcgacagagccagcctgaagctgggcttggacaaggctgtgctacagagcatg
agcgggagagagaacagcgcaggggggcagatgcagcagctctccaagaaggagattgag
gacttgctgcggagaggggcctatggggccatcatggacgaggaggacgaagggtccaag
ttctgcgaggaagatatcgaccagatcctgcagcggcgaaccaaaaccatcaccatagag
tcggaggggaggggctccacttttgcaaaagccagtttcgtggcgtccgggaacaggaca
gacatctctttggatgatccaaacttctgggacaagtgggctaagaaagcagagattgat
atggaggccctcaatgacagaaacagcctggtgatcgacaccccgagagtgaggaagcag
acccgacccttcagcgccacgaaggaggagctggcacagttatcagagggggagagcgag
ggcgacgacaagcccaaactgcgccggccgcacgaccgcctcagcggctacggcaggacc
gagtgcttccgggtcgagaagaacctgctggtttatgggtggggccgctggagagacatc
ctgcagcacagccgcttcaagaggcagctgaacgagcacgacgtggaggtcatctgccgg
gcgcttctctcctactgcctgctgcactaccgaggcgacgacaagatcaagagcttcatg
tgggatctgatcgctcccaacgaggacggccagaccagggagctgcagaaccacctcggg
ctctctgctccagttcccaggggccgcaaagggaagaagatgaagactcagcccagcact
tttgacatccagaaagcagagtggctgcgcaaacacaacccagaacagctgctgcaggac
gagggctataagaagcacatcaaacaccactgcaacaaggtgctgcttcgggtgaggatg
ctgtattacctgaagcaggaggtaataggagaccatttccagaaggtgattgacggggct
gattccagcgagattgacatgtgggttccagaaccggaccactctgagctccctgctaac
tggtgggatgcggatgccgacaagaatctcctgcttggcgtctttaagcatggttatgaa
aagtatagcaccataagaggagacccggccctgagctttttggagcgagtgggcaagcct
gacgagaaggcaatcgccgcggagcagagggccaacgactacatggatggagacggtgac
gaccccgaatacaaaccggctccagcgctgctgaaggatgagatggaggatgatgcctcg
tcccctggagagctgatcattgcagatggtaacggagatgggcagatgatgatgatgatg
gaaggtgacacaatatactggccccctccctctgccttaaccactcgcctgcgtcgactc
atcacagcctaccagcgcaacaccaagaacaggcagatccagcaaatccagcaaatccag
caggtgcacccagtgcagcccagcgccctgcaccctgcgcaccaggagcccatcaacccc
aagatagcagcaaagatagagcgacagcaaaggtggaccagacgagaagaggccgatttc
tacagagtggtgtccacgttcggagtggtgttcgacccagagcagggccgcttcgactgg
accaagttccgcgccatggccaggctgcacaagaagacggacgagagcttgcagaagtac
ctgtgtgctttctcagccatgtgccggagggtctgccgtcttccccccaaggatggagaa
cctgtggacccgtccatctctatccaggagatcacggaagagcgagcctcgcgcacactg
taccgcatcgagctcctgcgcaaggtcagggagcaggtgttgcggcacccccagctctac
gagcggctacagctgtgccaccccagccaggacctgcctgtgtggtgggaaacgggcacg
cacgaccgggaccttctgattggcgcagccaagcatggggtcagccgcacggactaccac
atcctcagagaccccgagctgagcttcatgatggcccagagaaactacagccagaacaaa
gggttgcagtccaggatccccacacccctcctgcagcaacagcagcagcatcagatgggc
ctggctgggtctcccctcaccctgcagcccaggttagaggaccccaaggcaggtcagccg
gaggactcccgacaaaaaggggaaagaactgaccggctcaaagaggagccacacacgtcc
gaggaggaagggtttgggtcagcaggggaatccaaggtcaaactggagccctggagcccg
cagggagacgcctgtgtgtccctgggtgtgctggacagcaaggaagagggagagaggcgc
atggtggcagccaggactgaacccctaactcccagctccgtagtgaagaagcaaaagcgc
agcagcaagagggggcgaggcgggggtggggggtctgactcggactctgatggctcgtcc
tcctcctcgcgctcctcctcttcctcttcgtcttcctcgtgctctcggtctggctccagc
tcctcctcctcctcctcctcttcctcctcatcctcctgctcgtcaggatcctcctcttcg
tcatcctcctcctcttcctcctcagaagacagcgacagcgactccgaggacagaaaggag
aacgctgaagtcacccctgtagtgaaaggtttcgatgaagacagcgtggcgtcgctcagc
actacccacgacgagactcaggacagcttcctcactgataacggggcacccagctccgca
cacgtctttcagggcggctacatgctcgctgcctcctactggcctaaggatcgggggatg
atcaatcgcctggacagtatttgccaggcagtgctgaaagggaaatggcccacagccagg
aagagctacgaaggcactgccgtggcctccttttacaccaccaagctcctggacagccca
ggcgcggacgcagggctccaggggctcccagctccccgggatgagctggctctgtcgtct
cagatgtcaaaggtgaagaagcatgttcgagaaaaggagtttacagtgaaaatcaatgac
caggaaggtggcttgaagctgactttccagaagcaggcccccccccagaagaggcccttg
gacagcgaggagggccccctggggcagcagcagtacctggctcgcctgcaggagctgcag
agcgcctcggacaccagcctggccgacttttccaagtctctgcccgctacagcagcagca
gcctctagccaccttagacctaacggagtactggatggccagcctgctgtgaagaagagg
agaggcaggcggaagaacgtagagggcatggacctgctctccatgaccaagaacaagcca
gctcccaaccatctcagcccaggcgatggcaatggctctaaggacagctcctgtgtgaac
ccggcactggcactcaaccagcctccaggagcgctggacatggagatcagagtcccggtg
attaacctgaaggatgggacgcggctcgctggggacgatgcacccaagaagaaggatctg
gagaagtggctgaaggaccacccaggatatgtagcagacgtgggagcattcattcctgga
cttggtaaaatgacatttcaagacggcagacccaaacagaagaggcatcggtgtagaaat
cccaacaagattgatgtgaacagcctgactggagaggaaagggtgcaggtcatcaaccgg
aggaatgcacgaaaggtgggaggggcatttgctcctccactgaagaacttgtgcagattc
ctgcaagagaaccgggagtatggagtaccccctgaatgggcagaggtagtgaagcattcc
ggcttccttccagaaagcatgttcgaccgcattctcacgggacccgtggttcgccaggag
gcgagcaggcgaggccggcgaccgaagagcgatgtttccaacgcggtcgctgggaacagt
ggccctgcgatgcctgtcagccctctgctgaccaatggtctgatctcagggatggacctg
tccagcctgcaagccctgcagcagaacctccagagcctgcagtccttgcagctgaccgct
ggtctgatgggcctgccagccggagatgccaacaacctggctgccatgtttcccatgatg
ctctctggcatgacagggctgcccaacctgctggggatgagcggcctgctgggcacatgc
cccgaggggcctggcaccgaggacaggaaggcaagcagtgccgacccttctacagcggaa
gccaagggcgacaggacagaaggtcccctggctggctcgggagaagcctccatgaccaac
tctccttcgacctccactgctgctccattaagtgcttctgctgtagcctcagcagctgca
gcctcaaaccacccgctggctcttaaccccttgttactatccagtatgctttatccaggg
atgctactcacaccaggccttaatcttcctgttccaccagtgtctcagtctaatcttttt
gacatgcagcagagtgcaaacagtgactcaagtgccgggaaggcctccgaaggagcagcg
caggaaaacccggacgaacctcaggaagaggagagcggagagagcgagcgggggctcggc
ggtgtggacccccagagggacaacagcacagaagagggctccgagaaaggggcttcttct
tcgtcgtcagagtctggaagttcatcatcttcatcagatgatacggactcgagcgattaa
DBGET
integrated database retrieval system
