Polyodon spathula (Mississippi paddlefish): 121296502
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Entry
121296502 CDS
T07273
Name
(RefSeq) FRAS1-related extracellular matrix protein 1-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121296502
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pspa04091
]
121296502
Lectins [BR:
pspa04091
]
C-Type lectins
Lecticans
121296502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Big_9
Calx-beta
Cadherin_5
Motif
Other DBs
NCBI-GeneID:
121296502
NCBI-ProteinID:
XP_041078065
LinkDB
All DBs
Position
2:complement(41317006..41371440)
Genome browser
AA seq
2184 aa
AA seq
DB search
MLTLISSLEVLVCLLCTTHSAEGSFLIVNKGLKVMKGHSAFLAEEDLKFDIPKEKDACKV
EVVTNEPITQRVGRLTPQVFDCHFLPHEVNYVHYGCPILDEDTILLRLYRFTETETFTEM
FHLHVKLIEPDCNIITLGPKSLEVPEFYGISNVIDKNSLSFDYDRKLNLECTVRVATQET
LLPVHGQLVIGEPERTEPRGDVPHSFVPIAQRIMNRAGVKCKDEICRQGLKLVQTTKVNC
DNFLLMGLRYQHLDPPSPDIDYIAIRLDLTDTRSRNIHKSEHAWIPVRIKNAIPNQSPKP
AFMSMFILEVDQFILTPLSTGALDAEDSETPKSLLIFNITRPPPQGYITHLSDHTKPISS
FTWNDLNEMLIAYQPPNNSHTERRNYEMEFEVHDFFFERSSPIMVHISIRTADTNAPRVS
WNMGLALLEGQSRPITWDQFQIVDNDNIKVVRLITVDGLQHGRLTVRGGKGFVFTVSDIK
AGVVRYHHDDSDTTKDFVVFRIFDGRHSTRHKFPINILPKDDSPPFLITNVMLELCEGQT
ALIQSSMLQASDMDSSDDYIVFNITRPPQAGEILKKPGPDVIGYPVGRFLQRDLFNAIVH
YRHLGNEVFEDSFEFILSDSHDPPNLSEPQVVLVHITPVDDQLPKEAPGVVRYLVVKETE
VVHLTKKQLHFTDVESPDRELTYTITTPPFFTSVYGRPDAGKLFLVDSIPKFTKDPAAPM
LRSFTQHAVNYMKVAYMPPIQDIGPDPQNIQFVFSVTSQHGGTIIDICFNITVLPVDNQP
PEVFTNQLKVEEGGVCLVSVDQLLVTDWDTREEMIWVRLERKPHHGEVELDGFPIKEEGT
FTLQDIKNQKVRYRHDSSETLQDDILFIASDGINSADFVLQVKVLPINDEAPVLKPGLNP
MLHCAEGQEVIITSEYIYSTDSDSDDQKLTYMIARQPYHGVVLKNGNIVDRFIQADIIAG
TVTFRHTGGEIGLSPRFDSITFVISDEEAGTHQSCCYDGPLPPAVRLHDLLPVYDLNITV
FPVDNQPPTIITGEMFVVDEGSSATITINHLIVSDADTPLEELKCVLASPPQFGYIENIL
PTPGFEKSNMGISIGSFTMKHVKELQINYVQSRHKGTEPTADQFLLYVTDGKHRSIETPF
YVIINPTNDEVPHFLARNITVQEGQMKELGPSIINVVDLDIPPDNLEFTIIQQPQHGMIM
NRIYGNDITHYKQRIQGHHNHELPVRDFTMDNLKHGMKLMYLHDDSENMDDGFTIQLSDG
KHNVRRFVSVKIFPVNDEKPQVIKNNGLVVEMGESRIISSAALFAEDNDSPGERLYFMFD
GIPKQGVLQRKVRSDWVAVSVGMNCTQEDIDMNLLRYMHTGAVGFLGQDSFSFHLWDGSN
RSPAQHFYITVKDMEKGDIAIFVKPLKISKGEQVMLTTDTLLSVDGTDKPEELMYVITSP
PAGGHIEYVSYPGVPITTFSQMDIAAQTVCFVHDNRADSQKEVLRFVVSNGLSTQNGTME
IAVEQAGRVLPTVSRNAGLLVLEGSMMVIPPEALQLSDPDTPAHSLTFQLAQLPQYGQLS
RRGAPLLQHSFTQLDVNSRDLAYKHAGGDSQIDRFSFVASDGTNHGFLIDGEKQTEPVFF
TIQIAQLDKSSPRIVHLQCISKVELLKDGRYGSYISSRDLKATDADTKDEEIIFQILRPP
DFGYLENTTTGDFVRQRFTQKDLNRRHILYVINPSLEALSDSLEVLVSDPTGNTGIPETL
ELKWSRIEFSQSEYVVCEDVGTLSLPITREGYAMESSFIGIKINEISASVGKDFTLSPSS
LIQFDPGVSSRTWNIRITSDRLEEAEEVFEVVLNSPVNSVLGSKMKLVVKIIDSRKGQCS
NGRNTGQVPAVPRLSGQLPPGTAEYPPPSHGVIQVEKIPLTPVEGTGWTRGDVPQENNSP
PPKKRLRVIGNGKMVRPSYIEQNGTDVVFTYHGIMSLRVEDDSSPSSSGKRAKILVTSRG
QQRYPVSSPTTELLHADKAATHSTKQDDYSKSFPKPCTTDLKGLLHFDQSAQKLFHCDGI
SWKPWKPTSDDINAKKCSLGWIYHGNHCYYISTDNKSTWNSAARACKEIHRGNLVSVLSK
PDMTWLWDFSGRKPFWIGLNDRVKAGKWEWLGGEPVSFTNWRKGPPRASRKAGQNCVLVQ
RRGKWQVKDCKKGKSHNYVCYVKT
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
atgctgacactgatttccagccttgaggtgctggtatgtctgctctgcaccacacactca
gcggagggctcctttctcatagtcaacaaagggctgaaggtaatgaaagggcattcagcc
ttcttggcagaggaagacctaaagtttgacatccccaaagagaaggacgcatgcaaggta
gaggtggtcaccaatgagcccatcacccaacgggtgggcaggctaacaccacaggtgttt
gactgtcattttctcccacatgaagtaaactatgtccactacggctgtccaattctcgat
gaagacaccatcttacttcggctttacaggtttactgagacagagacattcacagaaatg
ttccacctgcacgtgaagctgattgaacctgactgcaacatcatcactctgggacccaag
tccttggaggtgccagagttctatggcatctccaacgttattgacaagaactcgctgtcc
ttcgactatgaccggaagctgaatttagagtgcacagtcagggtggccactcaggagact
cttcttcctgttcacggacagctggtcatcggggaaccagagaggacagagccacgagga
gacgtgccacacagctttgtccctatagcccagagaataatgaatagggcaggagtgaag
tgtaaagatgagatctgccggcagggactgaaactggttcagaccaccaaagtgaactgt
gacaacttcctactgatgggcctgaggtaccagcacctggatccaccctcacctgatatt
gactatattgctataaggctggacctcactgacaccagaagcagaaatattcacaagtcc
gagcatgcttggatcccagtccgcatcaagaacgcaatcccaaaccagtctcccaaaccg
gccttcatgtccatgttcatcctggaggtggatcagttcattctcacccctttgtctaca
ggcgcactagacgctgaagacagcgagacccccaagtctttgctcatcttcaacatcacc
aggcctccacctcagggctacatcacccacttgtctgaccacacaaaaccaatctcatcc
ttcacctggaacgacctcaatgagatgctgatagcctaccagcccccaaacaacagtcac
acagagcggaggaactatgagatggagtttgaggtccatgatttcttcttcgagagaagc
tcaccgattatggtgcatatctcaatcagaacagcagacaccaatgctcccagagtttct
tggaacatgggtcttgctctcttagaaggacagtcccgcccaatcacctgggaccagttt
cagattgtagacaacgataacataaaagtggttcgtctgatcactgtggatgggctacag
catggcaggcttactgtaagagggggaaaaggttttgtgttcaccgtgagcgacatcaaa
gctggggttgtgcgttaccaccacgacgacagtgacaccactaaagactttgtagtcttc
aggatattcgatgggcgtcatagcacacgccacaagttccccatcaacatcctgccaaag
gacgacagtccacccttcctcatcaccaatgtgatgctggagctgtgtgaaggccagacc
gccctcattcagagctccatgctgcaggcctctgacatggactccagtgatgactacatt
gtcttcaacatcacccgcccgccacaggccggggagatcctgaagaaaccaggccctgat
gtcataggttatcctgtaggtcggttccttcagagagatctgttcaatgccattgtgcat
tatcggcatctgggaaatgaagtgtttgaagattcctttgagtttattctctcagacagc
catgacccacccaatctatcagaaccacaggtcgtcctagtgcacataactcctgtagat
gaccagctgcctaaagaagcacctggggttgttcggtatctggttgtcaaggagacagag
gttgtgcacctgaccaagaagcagctgcacttcacagacgtagaatcacctgacagagag
ctcacctacaccatcaccacccctccattctttacctctgtttatgggagacctgatgct
gggaaactgttcctggtcgacagcatccctaaatttacaaaagatccggctgctcccatg
ctgaggtcgttcacacagcatgctgtgaactacatgaaggtggcctacatgcctccaatc
caagacataggaccagaccctcagaacatacagtttgtgttctctgtcactagccaacat
ggcggcacaataattgacatctgcttcaacattacagtcctgccagtggataaccagcca
cctgaggtgttcaccaaccagctgaaggtggaggaaggaggggtatgtctagtgtctgtg
gaccagctgctggtgacggactgggacaccagagaggagatgatatgggttcgactggag
agaaaaccccatcatggtgaggtggagctggatggcttccccatcaaggaggagggaacc
ttcaccttgcaggacatcaaaaaccaaaaagttagatatcgccatgacagctctgagacg
cttcaggatgacattctctttattgcttcagatggcatcaattctgcagattttgttctg
caagtcaaggtgttgccgattaatgatgaagcaccggtgttaaaaccaggccttaatccc
atgttgcattgcgcagagggccaggaagtgattatcacttccgaatacatctactccacc
gacagtgacagtgatgaccagaagctcacgtacatgattgcacgtcagccataccatgga
gtagtcctgaagaatggtaacattgtggatcgattcatccaggctgatattattgctggg
actgtcacattcagacatacaggaggggagattggactgagtccccggtttgactccata
accttcgttatctctgatgaggaagccggcacgcatcagagctgctgctatgatgggcct
cttccacccgcagtgcggcttcatgatttgcttcctgtgtacgaccttaacatcactgtc
tttcctgttgataaccagcctcccaccatcatcactggggaaatgtttgttgttgatgaa
ggatcttcagccacaataactatcaaccacctgattgtcagcgatgctgatactcctctg
gaagagttaaagtgtgtcctggcttctcctccacagtttggctacatagaaaacattctg
ccaactccagggtttgaaaagagtaatatgggcatcagcataggctcatttaccatgaaa
cacgtgaaggaactccagattaactatgtgcagtctcgacacaaggggaccgaacccact
gcagaccagttcctgctctatgtcacggatggcaaacaccgttccattgaaacacccttt
tacgtcataatcaacccgactaatgatgaagtcccacattttttggcaaggaacatcact
gtgcaagagggccaaatgaaggaactgggcccatctataatcaacgtagtggacttagat
attcccccagacaacctggaattcaccataattcagcagccacagcatggaatgattatg
aatagaatctatggaaatgacatcacacactataaacaacgtatccaaggtcaccacaat
catgagcttcctgtacgtgatttcacaatggataacctgaagcacggaatgaagctgatg
tacttacatgatgactcagagaatatggatgatggcttcacgattcagctgtctgatgga
aaacacaatgtccgcagatttgtttcagtcaagatctttcctgtcaacgatgagaaaccc
caagttataaagaacaatggattggttgtggagatgggagagtccaggattatctccagt
gcagccctttttgcagaagataatgactctccaggcgaacgtctctactttatgtttgat
ggtattccaaagcaaggagtacttcagaggaaggtacgctctgactgggttgctgtctct
gttgggatgaactgcactcaggaggacattgatatgaacctcctgaggtacatgcacaca
ggagctgtaggattcctcggccaggattccttcagctttcatctatgggatgggagcaac
cggtctccagctcagcacttctacatcacagtcaaggacatggagaaaggagacattgcc
atttttgttaaacccctcaaaatctccaaaggagagcaggtcatgttgaccactgatact
ttgctttccgtggatggcactgacaagcctgaagaactgatgtatgtcattacctctccg
cctgccggtggccacatcgagtatgtcagctaccccggggtgcccatcaccactttcagc
cagatggatatcgccgcacagaccgtctgctttgttcatgacaacagagcagattcacaa
aaggaggtgttgagatttgttgtcagcaacggcctgtccactcaaaatgggacgatggag
attgccgtggagcaagctggccgcgtcctgcctacggtctcccgcaacgcgggcctgcta
gtgctggagggctcgatgatggtgattccacccgaggccctgcagctctctgacccagac
accccagcacacagcctcactttccagctggcacagctcccacagtacgggcagctctcc
cggcgcggtgccccactgcttcagcacagcttcacccagctcgatgtgaacagcagggac
ctggcctacaaacacgctggaggggactcccagattgaccgcttcagctttgtggcttct
gacgggaccaaccacggtttcctcattgatggggaaaagcagacagagccagtcttcttc
actatccagatagcgcaactagacaagtcttctcctagaattgttcaccttcagtgcata
tcaaaggtggaattgttgaaggatggccgttacgggagctacatctcctccagagacttg
aaagcaacagacgctgataccaaggacgaggagatcatcttccagattctacggcctcct
gattttggttacctggaaaacacaacaacaggagactttgttcgacagaggtttactcag
aaggatttaaacagaagacatattctttatgtcatcaacccatctctggaggccctgtct
gacagcctggaggttttggtctcagacccaacaggaaatactggcattccagaaacgctt
gaactgaagtggtctcgaatcgagttctcccagtctgagtatgtagtgtgtgaagatgta
gggacactttcattgccaattactagagagggctatgcgatggagtcttctttcattgga
atcaagatcaatgagatctctgcttctgtcgggaaggattttactctcagcccctccagc
ttgatccagtttgatcctggggtttcatccaggacttggaacataaggataacaagtgac
agactagaagaagctgaggaggtgtttgaagtggttctcaactcacctgttaacagtgtg
ctaggaagcaagatgaaattagtggtgaaaatcattgactcaaggaaaggtcagtgtagt
aatggtagaaacactggccaggtcccagctgtccctcgactaagcggtcagctgccccca
ggcactgctgagtatcctccccccagtcatggtgtaatccaggtagagaaaatcccactt
actcctgtggagggcactgggtggacaagaggcgacgtaccacaggaaaacaactcacct
ccaccaaagaaaagactcagggtcatcggaaatggaaaaatggtccgcccttcatacatt
gaacaaaatgggacagatgtagtgtttacataccatgggatcatgtcgctcagagtggag
gatgatagctctccatctagctctggcaaaagagccaagatactggtgaccagtagaggg
cagcagaggtatcccgttagttctcctaccactgagctcctgcatgctgacaaagccgcc
acccactccacaaaacaggatgactacagtaaatcctttcctaagccctgcacaactgac
ctgaaaggtcttcttcattttgaccaaagtgcccaaaaactgtttcattgtgatgggatt
tcttggaaaccgtggaagccaactagtgatgacatcaatgccaagaaatgttctcttgga
tggatctaccatggaaaccattgctactacatcagcacagacaacaaatcaacatggaat
tcagctgcaagagcgtgcaaggaaatacatcgtggcaatctggttagtgtcctctcaaaa
cctgacatgacgtggctgtgggacttcagcggaaggaagccattttggattggcctgaat
gacagagtgaaggcagggaagtgggagtggcttggtggagagccagtgtccttcacgaac
tggaggaaaggacccccacgggcatcaaggaaggcgggacagaactgtgtgttagtgcag
agaagagggaagtggcaagtgaaagactgcaagaaaggaaaaagccataactatgtctgt
tatgtgaaaacataa
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