Polyodon spathula (Mississippi paddlefish): 121296513
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Entry
121296513 CDS
T07273
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121296513
03036 Chromosome and associated proteins [BR:
pspa03036
]
121296513
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121296513
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121296513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
RRM_1
UBA_7
UBA
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121296513
NCBI-ProteinID:
XP_041078095
LinkDB
All DBs
Position
21:complement(30597460..30652615)
Genome browser
AA seq
1904 aa
AA seq
DB search
MLMMWQYPNSSAGGAHYRGTEENMHPALREKEQETQEENHLMEEKKKKKQEEKKKKEAAH
KKAAEQKTKVPVSAKLISSPPHPANRSVTPPIPTVSSSGNGKRAPPSAQQQLPAAPRFPL
REVPPRFRQQEHKQLLKRGQPLPAGTLVTTGQPGASSPPQTPPASPSKQHAEFPHQSGLG
AQYENLHCGHRPSNCIWDQVIVDRSDTEEWPSISYSESHAPSECTTDIDCTTEISSSNMS
MATGAGQQSHFSAHHPSSKNSGNHSGNMVSNQGGASRGWGSGPTHGSSAIGSDGKTDSMP
MGGRGQPCWGSSNFNLNLNPSANPAAWPVLGHEGAGMGSGGPGGNKSPPPPNLCSPASAL
SAQGGGGSMGSTNGNPVGGSGNSAWGSMLPPDPTESRPSPSTIVSFSVEPQNLNTDGPNN
TKQQPLSPIHSLPSWGSVPVDMGPLVQPQVNGEESSVWGNGDAKPTGSKDSAWNFGPPSG
PGILMPWGRGGGNTGAWGRSACSGGGDWGKHSSETKGWETSGSPPQEQSVSWSNAPASEG
SNDNLQGISRRMERPHGELDAPLPMGRQDLDPRVLSNTGWGQTPVRQHTAWELEEMARSD
HKNDTGVDSWSTGSSSSSSSAPPPAPANTSADPAAAQVSNSGGKGEGSTSNSSAAPGWGN
PAQAIATPASSLPCSSWDEAVSKKAPSGSGGWGEPPSGSSNSTAPKGGMSWGQEEKSPSW
DDPPAKPKPQSWGEGPKPGHGWGTGASGGGDWGEPREEKKNGVTPASWEQNPRYAGWGKP
GQGAGAGVGVGWMEAQRPSVPVQAWGGKPQDNSNSSGSIGSWGGSGTVKQCGTGWGGGGG
GGSKQEQGGEPTGWEEPSPPSVRRKVEIDDGTSAWGDPSTYNKTVNLWDKNNSVIQSGPD
NAAASNNHGDAAASNNHGDAAASNNHGNAAASNNHGNAAASNNHHHHHHSSHAQNHSQAR
IHAHSHAPSNTHSSPQEQTTPHQPSAPQNRSVLDGPGWGDSSSSHPKPEPSWGKPVSPAA
VVDNGTSAWGKPPGSCGGWEDNPSDPSGSYGRGNPPSGLPPCKPASKSMQDGWGGSPDEL
GGWDRDEGDVWNSAASQESNSSCNSWGNLPKKGLQKIIRVPSKQDEAWILSRLIKQLTDI
GFPREPAEEALKSNSMNLDQAMSALLEKKSELDKRGMGMCDYNGLLSKPLGCRPPAISKE
SSSDCSPFLDKDGGLVEDAPASPFLPSPSLKFPLSSSALPNQALGGVPSGLAMQNINNRQ
IQNSMFCNSGAAQFRAMQHQPAVPPLSSSQPSVRAQVPQFLSPQVQAQLLQFAAKNIGLN
PALLTSPMNPQHMTLLNQLYQLQLSYQRLQIQQQMLQAQRSVSGPMRQQEQQVARTINNM
QQQIQQHQRQLAQALLMKQQPPPHPGLHPGTGKSALDSFPPHLQAPGLPDLQTKEQQCSP
NSFSPHPLSGLNPNMNVNSMEVGSGLSMKDSSQSQSRLPQWTHPNSMENLSGTSSPLEQS
LSKHGAIPAGPSIGPPGKSPMDDSYIPYNLIPSSESPASPLVAPDNWTQAKSANDKICNG
TNINWPPEFCPGVPWKGLQNIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSEGSS
PTSSQNTTLPSPSAWPLSAYTSSFSMCESATNTAGKPSDMKSTWSPGPISHPQASLSHEL
WKVPQGPRNLSAPTRPPPGLTNTKPSSTWGGNSLGLTPGWSSSYTSRTTWSTDSSARTSS
WLVLRNLTPQIDGSTLRTLCMQHGPLLTFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVL
GNTTILAEFAGEEEVNRFFAQGQSLTPTTSWQAHPGTNQMRLGGAGAGHWNSSGGKGGSE
LLWGGVPQYSSLWGPPGGEDSRGIVSPTPINTLLPGDLLSGESM
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgatgtggcaataccctaacagctctgcaggcggtgctcattacagaggcact
gaggagaacatgcatccagcactcagagagaaggaacaggaaacgcaagaagagaaccat
ttgatggaagaaaagaaaaagaaaaagcaagaagaaaagaaaaagaaggaagccgctcac
aaaaaggctgcagaacaaaaaaccaaagtgccagtatctgccaagctcatctccagccct
ccccaccctgccaatcgcagtgtgactcctcccatccccacggttagtagcagcggcaat
ggcaagcgagctcctcccagcgcccagcagcagctgccggcagccccgcgcttccctctc
cgcgaggtccccccacgcttccgccagcaggagcacaagcagctactgaagagaggacag
ccactgccagcagggactctcgtcaccacgggacagccaggggccagctcgccccctcag
accccccccgccagccccagcaagcagcacgcagagtttccccaccagagtggcctggga
gcccaatatgagaatctccactgtggacaccggcccagcaactgcatctgggatcaagtg
atcgtcgatcggagtgacacggaggagtggccttccatttcctacagtgagagccacgcc
ccctcagaatgcaccacggatattgactgtactacagagataagcagcagcaacatgagt
atggccacgggggccgggcagcaaagccacttctcggcccaccatcccagcagtaaaaac
agtggcaaccactctggaaacatggtttccaaccagggtggagccagccggggctggggc
tctggtcccacccacggctcctctgccattggcagcgacgggaagacagacagcatgcca
atgggagggaggggtcagccctgctgggggtcctccaactttaacttgaacctgaaccct
agcgccaacccggctgcgtggccagtactggggcacgaaggggctggaatggggagcggt
ggaccaggaggcaacaaatcccctcctcccccaaacctctgcagcccagctagtgccctg
tcagcccagggagggggcgggagtatgggcagcaccaatgggaatcctgtagggggcagt
ggcaacagtgcctgggggagcatgcttccaccggacccaacagagtcacggccctcaccg
tccacgattgtgtctttcagcgtcgaacctcagaaccttaacactgatggaccaaataac
actaaacagcagcccctcagccccatccacagcctgcccagctggggttctgtccctgtg
gacatggggcctcttgtgcaaccgcaggtcaatggggaggagagctcagtgtgggggaat
ggagacgccaagccaacaggttccaaggattcagcttggaattttgggccacccagtggc
cctgggattctgatgccttggggccgaggcgggggtaacacaggggcttggggccgatcg
gcctgcagtggaggtggagactggggcaagcattccagcgagaccaaagggtgggagaca
tcaggttcccccccgcaggagcagtctgtttcctggtccaacgcccccgccagcgaagga
agcaacgacaaccttcaagggatatcccgtaggatggagaggccacatggggagctcgat
gctccccttcccatgggtaggcaagacctggacccacgggtgctgtccaacaccggctgg
ggccagacccctgtcaggcagcacacagcctgggagctggaggagatggcacggtctgat
cacaagaatgacacgggtgtcgactcttggagcactgggtcgtcttcatcatcctcgtcc
gccccccctccagcgcctgcaaacaccagcgccgaccctgccgctgctcaggtgtctaac
tcaggtgggaagggtgaagggtccacttccaattcctcggcagctccgggctggggaaac
cctgcccaggcgatagccacaccagcctccagcctgccctgctccagctgggatgaggca
gtcagcaagaaagcacccagtgggtctggaggatggggggaacccccttcaggcagctcc
aactctactgcccccaaaggtgggatgtcctggggtcaggaggagaagtctcccagctgg
gatgacccacctgccaaacccaaacctcaaagctggggcgaaggacccaagcctggacat
ggctggggtacaggggcaagtggggggggggattggggtgagcccagagaggagaagaag
aacggcgtgactccagcctcttgggaacagaacccccggtatgcaggctggggaaagcca
ggacaaggagcgggagcgggggtcggggttggttggatggaagcacagaggcccagtgta
ccggtgcaagcttggggaggcaagccccaggataatagtaatagcagtggcagcataggg
tcctgggggggatcaggcacagtgaaacagtgcggaacgggctggggaggaggaggtggg
ggggggagcaagcaggagcaagggggtgaacctacgggttgggaggaaccctctcctccc
tccgtgcgccgcaaggtggagatcgacgatggtacctcagcttggggagacccgagcacc
tacaacaagactgtcaacttgtgggacaaaaacaactctgtgattcagagcggccctgac
aacgctgctgccagcaacaaccacggcgacgctgctgccagcaacaaccacggcgacgct
gctgccagcaacaaccacggcaacgctgctgccagcaacaaccacggcaacgctgctgcc
agcaacaaccaccaccatcatcaccacagcagccacgcccagaaccacagccaagctcgg
atccatgcccacagccacgcacccagcaacacacacagcagcccgcaagagcaaaccaca
cctcatcaaccaagtgccccccagaacagatctgtacttgatgggccaggatggggagac
tcgtccagctctcatccgaagcccgagccctcatgggggaagcccgtctccccggcagca
gtggttgataatgggacctcggcctgggggaagccccctggcagctgtggggggtgggag
gacaacccctccgatccatcagggtcctacggcagggggaaccccccctcaggactgccc
ccctgcaagccagcctccaaatctatgcaagatggttggggaggcagtccggacgagctg
ggcgggtgggatcgggacgagggggatgtgtggaacagcgctgcttcccaggagagcaac
tcatcctgcaactcctgggggaacctgcccaagaagggactgcaaaagatcatcagggtc
cccagcaagcaggacgaggcctggatcctgagccggctgatcaaacagctcaccgacata
ggcttcccgcgggagccggctgaggaagccctgaagagcaacagcatgaacctggaccag
gcgatgagcgccctgctggaaaagaagagcgagctggacaagcgagggatgggaatgtgt
gactacaatggcctgctctccaaacctctgggctgccggccccctgcaatctccaaagag
tcttcctcggactgctcccctttcctcgataaggatggcggcctagtggaagatgcccca
gcctcaccgtttttgccttctccgagcctgaagttcccgctctccagcagtgccctgccc
aaccaggccctgggtggggtcccctcgggactggccatgcaaaatataaacaacagacag
atacagaacagcatgttctgcaatagcggagcagcacaattcagggccatgcagcatcag
ccagcagtgccgcctcttagctcctcccagcctagtgttcgcgctcaagtgcctcagttt
ctctcccctcaggttcaagcacagctcttgcagtttgcagcaaaaaacattggtctgaac
cctgcacttttaacctcgccaatgaaccctcagcacatgaccctgttgaaccagctctac
caactgcagctgtcgtaccagcgtttacaaatccagcagcagatgttgcaggctcagcgc
agcgtttccggtcccatgagacaacaagagcagcaggtcgcacgtacaatcaataacatg
cagcaacaaatccaacagcaccagcgacagctggcccaggcccttctcatgaaacagcag
cctccacctcatcccggcctgcaccctggcacaggaaaatcagccctggatagctttcca
ccccacctacaggctccgggacttcctgacctgcagaccaaagagcagcagtgttcgcca
aactccttctcccctcaccccctctctggactgaatccaaatatgaatgtaaacagcatg
gaggtgggtagcggtctgtccatgaaggactcctctcagtctcagtcccgtctcccgcag
tggacacacccaaattccatggagaacctctctggcacctcctctcctctggagcagagc
ctcagcaagcacggtgctatccctgcaggtcccagcatcggccccccagggaagtccccc
atggatgactcctacatcccctacaatctaatccccagcagcgagtctccagccagtcca
ctagtagccccagacaactggacacaggccaaatccgctaatgacaaaatctgcaacggc
accaacatcaactggccaccagagttctgtcctggcgtgccttggaaaggactgcagaat
attgaccctgaaactgaccccaatgtgaccccaggaagtgttcccagcggccccaccatc
aacaccaatatccaggatgtaaaccgctacctgctcagggacaggagtgaaggctcatct
cccacgtcatctcagaataccacgctgccttcaccgagtgcctggcctctcagtgcctac
actagctctttcagtatgtgtgagtctgcaaccaacactgcaggtaaaccatcagacatg
aagtcgacctggtcccctggccccatctctcacccccaggcctccctgtcccatgagctc
tggaaggtgccacaaggtccccgaaatctttctgctcccacgcggccccccccagggctc
accaacaccaagccatcatccacctgggggggcaactcactgggcttgacgccaggctgg
agcagctcctacacctctcggaccacctggagcactgacagctctgcaagaacgagcagc
tggttggttctacgcaatctcaccccccagattgacggctcaactctgcggacgctgtgc
atgcaacatggccctctccttacattccacctgaacctgacccaagggaatgctgtcgtc
cgttacagctccaaggaggaggcagccaaagcacagaaatccttgcacatgtgcgttctg
ggtaacactaccatcctggcagagttcgccggggaggaggaagtgaaccgcttttttgca
cagggtcaatccctgacccctaccaccagctggcaggcccatccgggcaccaatcagatg
cggctgggtggggcaggggcagggcactggaacagcagtggggggaaggggggcagcgag
ttgctatggggaggggtcccccagtattccagtctctggggaccccctggaggggaggac
tccagggggatcgtgagccccacccccatcaacacactgcttccaggagacttgctgagt
ggggaatccatgtag
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integrated database retrieval system
