Polyodon spathula (Mississippi paddlefish): 121296518
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Entry
121296518 CDS
T07273
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121296518 (ctcf)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121296518 (ctcf)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121296518 (ctcf)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121296518 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_ZN142
zf-C2H2_REST
zf-C2H2_ZNF142_18
LIM
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_15
Zf-C2H2_ZNF451_C
Motif
Other DBs
NCBI-GeneID:
121296518
NCBI-ProteinID:
XP_041078109
LinkDB
All DBs
Position
21:2746013..2754874
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AA seq
778 aa
AA seq
DB search
MKFPLLMQVITMETEENEAVVDEGETFSKGKERKTYQRRRDGGPEEETDVLVQGQPDGSE
EQVAGEMVQDVNVNSNVDMVLMEQLDPTLLQMKTEVLETDVHQEGGETTVDETQIITLQV
VNMEEQPINLGELQLVQVPVPVSVPVSSATVEEFQGTYENMPKEGDPVICHTLPLPEGFQ
VVKVGANGEVETVEQEELHHQQQQIEQQQQQQQQQSQQNEDSSWQKDPDYQPPSKKSKKT
KKSKLRYNTEEGKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKQPKPTKIKKKGVKKTF
QCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQD
CDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSY
ASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI
ARKSDLGVHLRKQHSYIEQGKKCRYCEAVFHERYALIQHQKSHKNEKRFKCELCDYACRQ
ERHMVMHKRTHTGEKPYACSSCDKTFRQKQLLDMHFRRYHDPSFVPTSFVCTKCGKTFTR
RNTMARHAENCCGPDSMESENGATPKKTRVGRKKKMRCKKDDDDDDDDSEEHADPELEDI
EEEDEDDLAEAEAEAEAEAQADLVEVEEEPLAPLPTPAKRKRGRPPGKANAPKPAPPAAI
IQVEDESTGTIENIIVEVKKEPEVPLEEMESEAVQLPVVEAAPNGDLTPEMILSMMDR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttccattgctgatgcaggttataaccatggagacagaggagaatgaagcagtc
gtggatgaaggagagaccttctccaaagggaaagagcgcaagacgtaccaaaggaggcgc
gacgggggtccggaggaggagactgacgtcctggtgcagggccaacctgacggatcagaa
gagcaggttgctggagagatggtccaggacgtcaatgtcaatagcaatgtggatatggtg
ttgatggagcagctggaccccaccctactccagatgaagacagaagtcctggaaactgat
gtacaccaggagggaggagagaccacagtggacgaaacccagataattacgttgcaggtg
gtcaatatggaggagcagcccatcaaccttggggagctgcagttggtgcaggtgcctgtt
ccagtgtccgtaccggtgagttctgccactgtggaggagttccagggcacctacgagaac
atgcccaaagaaggggatccagtgatctgccacacactgccattgcccgagggcttccag
gtggtcaaggtgggtgccaacggggaggtggagacagtggagcaagaagagctgcaccac
caacagcagcagattgaacaacagcagcagcagcagcagcagcagtcccagcagaacgaa
gacagctcatggcagaaggatcccgactaccagccaccctccaagaagtccaagaaaacc
aaaaagagcaagctgcgttacaacaccgaagagggcaaggacatggacgtgtctgtttat
gactttgaagaggagcagcaggagggcctgctttcagaagtcaacgctgagaaagtcgtg
gggaacatgaagcagcccaagccgaccaagattaaaaagaaaggtgtgaagaaaacattc
cagtgcgagttgtgtagctacacctgtccccgtcgttcgaatctggaccggcacatgaag
agccacactgatgaaaggcctcacaaatgtcacctgtgtggcagagctttcagaacagtg
acgctgctaagaaaccaccttaacacccacacaggaaccagaccacacaaatgtcaagac
tgtgacatggcctttgtgaccagtggagagctggtcagacatcgccgctacaaacatacc
catgagaaaccgttcaagtgctctatgtgtgactatgccagtgtagaggtcagcaagtta
aaacgccacatccgctcccatactggagagcgcccattccagtgcagcttgtgcagctat
gccagcagggacacctacaaactgaagagacacatgaggacccattcaggagagaagcct
tacgaatgttacatctgtcatgctcgcttcactcagagcggcactatgaagatgcacatt
ctgcagaaacacacagagaatgtggccaaatttcattgtcctcactgtgacactgtaata
gccagaaagagtgacctgggtgttcatttgagaaagcagcactcgtacattgagcagggg
aagaagtgccgttactgtgaagctgtgttccatgagcgctatgctctaattcaacaccag
aagtctcacaagaatgagaagcgcttcaagtgtgagctgtgtgactatgcttgtagacag
gaacgccacatggtgatgcacaaacgaacccatacaggagagaagccgtatgcctgcagc
agttgcgacaaaaccttcaggcagaaacagcttttggacatgcacttcaggcgttaccat
gatcccagctttgtgcccacctcctttgtctgcaccaaatgtggtaaaacatttacacgc
aggaacaccatggctcggcatgcagagaactgctgtggaccagactccatggaaagtgag
aacggagccacacctaaaaagaccagggttggaaggaagaagaaaatgcgctgcaagaaa
gatgatgatgatgacgatgatgatagcgaggagcatgcagatcctgaactggaagacatt
gaggaggaggatgaggacgacctcgctgaagcagaagcagaggcggaggctgaagctcag
gctgatcttgtggaggtcgaggaggaaccacttgcccctctgcccaccccagctaagaga
aaacgaggccgaccccctggcaaggctaacgcaccaaaacctgctccacctgcagccatc
atacaggttgaagatgagtctactggtaccattgagaacatcatagtggaggtgaagaag
gaaccagaggtgcccctggaggaaatggagagtgaggcggtccagctgcctgtagtggag
gcggctcccaacggggatctgaccccggagatgattctcagtatgatggaccggtga
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