Polyodon spathula (Mississippi paddlefish): 121296533
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Entry
121296533 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: DENN domain-containing protein 4C-like
KO
K20163
DENN domain-containing protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121296533
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121296533
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
DUF2464
PPR_2
Papo_T_antigen
PPR_3
Motif
Other DBs
NCBI-GeneID:
121296533
NCBI-ProteinID:
XP_041078146
LinkDB
All DBs
Position
2:complement(41579303..41641511)
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AA seq
1868 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDTSTPLDQEISLSDTKSSGPKAPITDISVINKSAGETVPEG
FTCIETTYTGQPANLNHGSLKSPELFLCYKRGRNKAPLDDIGVLYEGKERLIQGCEVIQA
TPYGRCANVNNSSVNSQRIFITFRRAPLIRPQNSLAVTDICIIVTSKGETPPHTFCKIDK
NLNCGMWGSNVYICYKKSVSTSNSIAYKAGLIFRYPEEDYESFPLSESVPLFCLPMGATI
ECWAPNTRYPLPVFSTFVLTVSSGEKVYGAAIQFYEPYSTEMLMEKQKLQLGLITAVEKK
IIPNKRVNTNKCICLLSHWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHSVPFPS
PQRPRILVQLSAHDALILSQPVCTPLPLSGANFSTLLMNLGPENCATLLLFVLLESKILL
HSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLALSGVLSAPCPFVIGVDSRYFDLYDP
PPDVVCVDLDTNTIYLSDDKRHYTWKHLPKKPSKSLFNSLTNLHHQLATVHRTAQEGAAV
EMTPIEADFSWHKKMTGLEMETQEAFLRFMASILKGYRTYLKPITQAPSEKATAADSLYD
LQGFLKSRDRAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKIFPSEKGTD
KGAKVDFDTSEDTRLIELDESQKSEHTVFVMPPEPPATDGPDPPGKYSYKNFPQLDPELF
DRPVELKPSSISRRVAGASLCNSSVLLAKRTKQEIKSAHKMAKRFYSNPPLWAKCLFSHC
YSLWFICLPAHVRISHSKVRAMQQAYNVLIKMRNTEVEVLDEVCYRVVMQLCGIWGLPVL
AVRVLFEMKNAGVHPNAITYGYYNKAVFESPWPSRNRSGYFMWTKVRNVLRGVAQFKQAL
GKTPSSKSPALVTTAPVGTAGGSDGDTVSHGSVDSSNDTNSGEHTLFVRNLIILDSTDKH
CSTGLLFTSPGAIEDSVVVEEGAPKIPRSPSNVGQAAAAAARQKAFAERSCSFSADSRAG
MLLKKGSLDMTSDQIAIKMGADAKILAAALSSTKTPPSADTGTKAKRELSFEGIEGEQEN
DIRTLFDKLPEVSESNMPFKLLELSENHVESNVVDSATSPLVDMGKMAVLRSKLRDGVED
PSKRNSLHLKPVEREDVKEGADPLSLLWSESVESMSVQSEEKIVPVMVSRNLADEIEMYM
NLKSPLGVKSTSMELHKGEVKEEDAHSGTAVLERRSSLPVDAVPQTAAVTPKHSPAVTQS
KTSTGKPKTSKQTPTRAQNLRSSSLSALVRSSQHGSLGSVMNSISGIKMDNLLSGPKMDV
LKSSMKQAANVASKVWGAVASAYSYSDDEDENSRSDNSFLVSLEDHLLGGGGESPSSRAA
VPGLASNSLTQSSTSLGSSSSSDTGRLQHSAYMTPRSVKAPESEKSEPSSSHHASTSSIY
QNCALEVLMSSCSQCRGCEALVYDEEIMAGWAADDSNLNTTCPFCKITFLPLLNIEFKDL
RGTASFFLKPSTSGDSIHSTNVPMTTDLVEQKAGPTAPAAAELINFSDSPQTSTSAAPEL
DAEEKNSENTQGGQVDPLGLSDRLPHKRGASLTRSNSVGGPLQNMDFPQRPSHGVSTSSL
PNSLQEAVDPLSLARPNPMPVSVPYLSPLVLRKELESLLENEGEHVIYTHKFINQHPIIF
WNLVWYFRRLDLPSNLPGLILTSEHCNNGVQLQQTSLSQDSKQVFVQLLWDNINLHQESG
EPLYLCWRSFLERKALLSPVDHQESRTLLNSIVRNIQTNDVYGPINLLLREIRKHPDNKR
QRSIYREILFLSLVSLGRENIDIEAFDREYKLAYDGLSPEQLKALSKMDAPPSNSVQWCL
KCFGAPVI
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagacaaaggccaccgagtgacagactactttgtagtcgcagggctaactgac
acgtccacacctctagaccaggagatcagcctctcggataccaagtctagtggccccaag
gcccccataacagacatctcagtcatcaacaaatcggcaggagaaacagtgcctgagggc
ttcacctgcatcgaaaccacatacacgggacagccggctaacctgaaccatggcagcctc
aagagcccagagttatttctgtgttacaagaggggaaggaataaagcaccactggatgat
attggggttttgtatgaggggaaggagaggctaatccaaggctgcgaggtgatccaggcc
acaccctacggacgctgtgccaatgtcaacaacagctcagtcaactcccagcgcatcttt
atcacctttcggagggcacctttaataaggcctcagaactcgctggcagtcactgatatc
tgcattattgttaccagcaagggagagaccccaccacacactttctgcaaaattgataag
aacttaaactgtgggatgtggggctccaatgtatatatttgctacaagaagtcagtctct
acttccaattcaatagcatacaaggctggtttgatcttcaggtatccagaagaagactat
gaatcattccccctatcagaatcagtccccctattctgccttcctatgggagctaccata
gagtgctgggctcctaacactagatatccactgccagtcttctcaacattcgtcttaaca
gtatcttctggggaaaaggtgtacggtgctgctattcagttttatgagccttactccacg
gagatgctgatggagaagcagaaactgcagctgggcctcatcactgcagtggagaagaag
ataatccccaacaagcgtgtcaacaccaacaagtgcatctgtctgctctcgcactggccc
ttcttcgagtccttccgcaagttcctcatgttcctctacaagctgtctgtctctggaccg
caccctcttcccattgaaaagcacatctcccactttatgcacagcgttcctttcccgtca
ccacagagaccaagaatcctagttcagctctctgcccatgatgccttgatactttcgcag
cctgtttgcacgcctttaccactaagtggagcaaattttagcactttgctaatgaacctt
ggtccagaaaactgtgccactttactcctgtttgtcctgctggagagtaaaattctgctg
cactcactgaggcctgctgtactgactggagtagcagaagctgtggtagcaatgatcttc
cctttccaatggcaatgtccctatatccctctctgtcccctggctctctctggggtcctc
agtgcaccttgtccgtttgttattggagtggactccagatattttgacctctatgatcca
cctccagatgtggtctgtgtggatctggacacaaacacaatctacttatcagatgacaag
aggcattatacctggaaacatcttccaaagaaacccagcaaaagcctctttaactccctg
accaacctgcatcaccagctggcaacagtgcacagaacagcgcaggaaggcgctgcagtg
gagatgactcctatcgaggcagacttctcctggcacaaaaagatgactgggctggaaatg
gagacccaggaggctttcctccgcttcatggcctccatactaaagggatacagaacatat
cttaaacccattacacaggcaccatcggagaaggccacggcggccgattcactctatgat
ctccaagggttcctgaaaagcagagatcgtgcacatcagaaattctattcgcagctgacg
aaaactcagatcttcatccgcttcatcgaagaatgcacttttgtgagcgataaggacaca
ggcttggcattttttgatgactgcattgaaaaaatttttccttctgaaaaaggcacagac
aaaggagcaaaggttgattttgacacctctgaggatactaggctgatcgagctggatgag
tcacagaaaagtgagcacacagtgtttgtgatgcctcctgaacccccagcaacagacgga
cctgacccgccgggcaagtacagctataaaaacttcccccagttggatccagagcttttt
gacagaccagtggagcttaaaccttctagtatcagcagacgggtggcaggtgccagttta
tgcaacagctcggtactgctggcgaaacgaaccaagcaggagatcaaatctgcccacaag
atggccaagaggttttattccaacccacctctctgggccaaatgcttgttcagccactgc
tatagcttgtggttcatctgcctgccagcccatgtgagaatatcccattccaaggtcagg
gccatgcagcaagcatacaacgtactcatcaaaatgagaaacacagaggtggaggtcctg
gatgaggtctgctacagggtggtgatgcagctgtgtggaatctgggggcttccagtgctg
gcagtgagagttctgtttgagatgaaaaacgctggtgttcatcccaacgccatcacatac
ggttattacaacaaggctgtgttcgagagcccgtggccaagcaggaacagaagtggttac
tttatgtggacgaaggtacgaaacgtgttgcgtggagtggcacagttcaaacaagcactt
ggaaagacaccatcttcaaaaagcccagccttggtaaccacagccccggttggcactgca
ggtgggagcgatggtgacacagtgagccacggcagtgtggacagctcgaacgacacaaac
agcggagaacacactctctttgtgaggaacctaatcatcctcgactccactgacaaacac
tgcagcacagggctgctgttcacttccccaggtgccattgaggattcagttgttgtagaa
gagggtgcaccaaagatcccccgcagccccagcaatgtagggcaagcagcagcagcagca
gcacggcagaaagcttttgcagagcggagctgtagcttcagcgcagacagccgggcaggc
atgctgctgaagaaggggagcctggacatgacctctgaccagatagccatcaagatgggt
gccgatgccaaaatcctggccgcagccctgtccagcaccaaaaccccgccatctgcagat
actggcaccaaagccaaaagagagctgtccttcgaaggaatagaaggggagcaggagaat
gacataaggactttgttcgacaaactcccggaggtttcagagagcaacatgccttttaag
ctgttagaactttcagagaaccacgtggagagtaatgtggtagacagtgcgacaagcccc
ctggtggacatgggaaagatggcggtgctcaggagcaagctccgggatggagtagaagac
ccatcaaagagaaatagcttgcatttaaagcctgttgagagggaggatgtgaaggaggga
gctgaccctttgtctctgctgtggtcagagagtgtggagtctatgtctgtccagagcgag
gagaagattgtccctgttatggtctctagaaaccttgctgatgagatagagatgtacatg
aacctcaagagccccttgggagtcaagtccaccagcatggagctccacaagggggaggtg
aaagaggaggatgcccattcaggaacagcagtccttgagcgcaggtccagtctgcctgtt
gatgctgtcccgcagacagccgctgtcacacccaagcacagcccggccgtgacacagtcc
aaaacctctaccgggaagcccaagacctccaaacagacgcctacccgggcccagaatctg
cgctccagttccctgagtgctctggtgcgctcctcccagcatggctctcttggctctgtt
atgaacagtatatctggcataaagatggacaacctgctctctggacccaaaatggatgtt
ctcaagtcaagcatgaaacaagctgctaatgtggcaagcaaagtgtggggagccgtggcg
tcggcctatagttattcagatgatgaggatgagaattcccgcagtgataacagcttcctt
gtcagtttggaagaccatcttctgggagggggaggagagagcccaagctccagggcagca
gttcctggcctagcctcgaatagcctgactcagagcagcacaagcctgggcagcagcagc
agcagcgacactgggagactgcagcactctgcctatatgaccccaagaagtgtgaaagca
ccagaatctgaaaaatctgagcctagttcatctcatcatgccagtacctcaagcatatat
cagaactgtgcactggaggtgttaatgtccagctgctcgcagtgccgagggtgtgaagcc
ctggtttatgatgaagaaattatggctggatgggctgcagacgattccaatttaaacacc
acatgccccttctgtaaaataactttccttcctctgctcaacattgagtttaaagacctc
cgaggcactgccagctttttcctgaagcccagtacgtctggggatagtatacacagcact
aatgttcccatgacaacggaccttgtggagcagaaagccggccctacagctcctgctgca
gccgagctgattaatttttcagattcgccacaaaccagcacctcagcagctccagagttg
gatgctgaggaaaagaacagtgaaaatacacagggaggccaggttgacccactggggctg
agcgacagactcccacacaaacgaggggcgtctttgacgcgaagcaacagcgttggggga
cccctgcagaacatggactttccccagcggccttctcatggcgtttcaacaagcagcctt
cccaacagcctgcaggaggcagtggatcctctgagcctggctaggcccaatcctatgcca
gtgtcagtcccttacctgagtcctctggtgctgcgcaaagagctagagtctctgctggag
aatgaaggagaacatgttatctacacccacaagttcatcaaccagcaccccatcatcttc
tggaacctcgtctggtacttcaggagacttgatctgcccagcaacctgcctggcctcatc
ctaacatccgagcactgcaataatggggtgcagcttcaacagacatcgctgtctcaggac
agcaagcaggtattcgtgcagctgctgtgggacaacatcaacttgcaccaggagtctgga
gagcccctgtacctgtgctggaggagcttcttggaaaggaaagctttgctctccccagtg
gatcaccaggaaagcaggactctgctgaactccattgtgcgaaacatccagaccaatgat
gtgtacggacccatcaacctgctcctgagggagatcaggaagcacccagacaataaacgc
caaaggagtatttacagagaaatcctgttcttgtcactagtgtctctggggagagagaat
attgatattgaggcctttgaccgagagtacaaactggcatacgatgggctgagcccggaa
cagctgaaagccctgagcaagatggatgcccctccaagcaacagtgtccagtggtgcctg
aaatgctttggggcaccggtgatctga
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