Polyodon spathula (Mississippi paddlefish): 121296553
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Entry
121296553 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3-like isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121296553
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121296553
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121296553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Beta-prop_THOC3
zf-RING_UBOX
Beta-prop_WDR5
EIF3I
zf-rbx1
zf-RING_5
WDR55
zf-C3HC4_3
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_1st
zf-RING_Vps41
zf-RING_11
WD40_2
CFAP43_N
zf-C3HC4_4
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_WDR75_1st
zf-ANAPC11
CALCOCO1
Beta-prop_WDR36-Utp21_1st
Myo5a
Motif
Other DBs
NCBI-GeneID:
121296553
NCBI-ProteinID:
XP_041078180
LinkDB
All DBs
Position
21:10896474..10914203
Genome browser
AA seq
734 aa
AA seq
DB search
MEEMEIDLQLGGTETVSHQVEQGGWSGVFPIIIPESESDIEEEERPRSPPILNPQPVPIL
RGLLQGVTSSVVEPARQGTVTRRRRTTRAQSQATRISTRSRWPLTASARQASAMDSFFHP
RHSQTVQLPYTGSLVHIVGDSATVSVTDPGSGNTTEQSDSEESLTDLEEAAVPTAPIVPA
LSLTTGLADPAVPAEGSAETVGSLQRDGGDPLQDSESSSPVNISGPKEGPIAITVPPNVP
GEEEGDTCSICFEPWTNAGEHRLSTLRCGHLFGFTCIDRWLRGQGGKCPQCNKKAKRMDI
VVLYARTLKALDTSEQERMKSLLEREQALRRKSELESAQCRLQLQVMTDECGRLRKQLQE
LKVLMSKQGCSSSQSSGSRTALSQGSSQAQGGCYTFNKAVMVSQTGNCRVLSYCEPLSCL
LASQPSPQATLVPGCGVKKISAVSMKACQYVPIHAKQIRGLAFSNQADSLMLSAALDSTV
KLTSLLTNTVVQTYNTGRPVWSCCWCLDDPNYIYAGLNNGSILVYDTRDTSTYVQELAPL
GSRCPVASLSYLPRAASAAFPCGGLISGTLEGGSFWERKDGTTYRAHLLPLETGGCTDIQ
VEPASRHCLVTYRPGKSNPSLRCVLMELSRGCQIDSSEDPPCTCHPVQSFNAGSSCKLLT
KNAVFESPARDGAMLVCAGDEASNSAMLWDAGRGSLLQKLQADQPVLDISPFEVNQSSYL
ALLTEKMVKIYKWD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggaagagatggagatagacctacagctggggggaacagagacagtgtcgcaccaagtg
gagcaaggtggctggagcggtgtgttcccgataatcattcctgaatcggagagtgacata
gaggaagaagagcggccccgtagcccccctattctgaacccccagcccgtgcccattctc
agggggctgctgcagggggttaccagctctgtggtcgagccagcacgacaggggactgta
acgaggaggaggcggacaacgcgcgcgcaaagccaggccactcgcatctccacaaggtcc
aggtggcccctcacagcaagtgccagacaggcctccgcgatggacagcttcttccatccg
agacacagccagaccgtgcagctgccttacaccggctcactggtgcacattgtgggggac
tcggccacagtgagtgtcactgacccgggttcagggaacaccacggagcagagtgactct
gaggagagcctgactgacctggaggaggctgcagtacccacggcccccatcgtgcccgct
ctctctctcacgacaggtcttgcagatcctgcagtgccagcagagggcagtgctgagact
gtagggtctctgcagagggatggaggtgatcctctccaagactctgagtcaagctctcct
gttaacatttctgggccaaaagaggggcccattgccatcacagtgccccccaatgttcct
ggggaggaagagggagatacctgttcaatctgtttcgaaccctggaccaatgcaggggag
caccgcctctccaccctgcgctgtggacatctctttgggttcacctgcatcgaccgctgg
ctcaggggacaggggggcaagtgtcctcagtgcaataagaaggcgaagcgcatggatatt
gtggtgctgtatgctcgcacgttgaaggccctcgataccagtgagcaggagaggatgaaa
agccttctggagcgtgagcaagccctgcggaggaagtctgagctggagtcggcgcagtgc
aggttgcagctgcaggtgatgacagatgagtgcgggcgactgcgcaagcaactccaggag
ttgaaggtgttgatgtccaagcaaggctgtagctcctctcaatcgagtggctcccgcacc
gccctctcgcagggctccagccaggcccagggggggtgctacactttcaacaaggctgtg
atggtgtcccagacagggaactgccgtgtgctgtcctactgtgagcctctcagctgcctg
ctggcctcccagccctccccacaagcaacactggtaccaggctgcggtgttaagaagatc
agtgcagtcagcatgaaggcgtgtcagtacgtacccatccacgccaagcagatccgcggc
ctggccttcagcaaccaggcagacagtctaatgctctccgcagcactggatagcaccgtc
aaactgaccagcctcctgaccaacacggtcgtgcagacttacaacactggccgtcccgtg
tggagctgctgctggtgtctggatgatcccaattacatctacgctgggctgaacaacggc
tctatcctggtgtacgacacacgggatacaagcacatacgtgcaagagcttgctcccctt
gggtccaggtgcccggtggcctccctgtcctatctccctcgtgccgcctcggctgctttc
ccctgtggggggctgatctctgggaccctggaggggggcagtttctgggagcggaaggac
gggacaacctacagagcccacctcctcccactggagacgggtggctgcacagacatccag
gtggaaccagccagccggcactgtctcgttacctacaggccaggcaagtcaaacccctct
ctacgatgtgtgctgatggagctcagcagggggtgccagattgactcgtccgaggaccct
ccatgtacctgccatcccgtccagtccttcaacgccggctcctcctgcaagctgctcacc
aagaacgctgtgtttgagagcccggcacgtgacggggccatgctggtgtgtgcaggagac
gaggcttccaactccgctatgctgtgggatgctggccgtggttctctgcttcagaaactg
caggctgaccagccagtgctggacatcagcccctttgaggtgaaccagagcagctacctg
gccttgctcacagagaagatggtgaagatctacaagtgggattga
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