Polyodon spathula (Mississippi paddlefish): 121296705
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Entry
121296705 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 3-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121296705
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121296705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
Motif
Other DBs
NCBI-GeneID:
121296705
NCBI-ProteinID:
XP_041078409
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All DBs
Position
21:11490359..11528658
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AA seq
849 aa
AA seq
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MLLSLAQDDKRIFWEFRMMETIGTSPILRLKWIFRQIVLIYFAGFFIVQRTESTAITMAA
CNGKLEQHTERRGVLYSPSWPLSYPAGLNCSWYIQGDHGDVITISFRNFDVEESRKCASD
WLLMGPASKREYRVCGSVIPPPFISTRDHVWVFFHSDTASSGQAQGFRLSYIRGKQGQSS
CQTDEFLCGNGKCIPSAWKCNTMDECGDDTDEKSCAPPPTEPQTTMCPSGTFQCTGVHST
QCLTNSLRCNSNKDCRDGSDEEDCPDTSCGKRLGNFYGSFASPDFFRRNHSGSDLRCTWY
VDTQDPRHIILQLDLQLGYSDYIRVYDGMGERSDKLLQTLSYHNNRRSASVESSRGQLTV
LYHAKPKSAGHGFNATYQVKGYCFPWEHPCGSDEGCFAEHQRCDGWWHCPNGKDEENCPA
CQKGEYPCEGNSGMCYAGPDRCNNQKNCPDSSDEKNCFTCQPGNFHCGTNLCIFETWRCD
GQEDCQDGSDEHNCLVAVPRKVITAALIGSLICGLLLVIALGCAFKLYSLRTREYRAFET
QMTRLEAEFVRREAPPSYGQLIAQGLIPPVEDFPVYNPSQASVLQNIRTAMRRQIRRHSS
RRSSSRRRLGRLWSQLFHRGARVRGQIPLLTPPSTSHTSLSGGIHSYQAVGGGGGHTPSS
TARVLDLETESEASCQPGAFHRDRQPLEHSPVDLSSQSSTDEAGDQTPGEEVSRDFCAGA
AGVHNDPLSGRIEAPNTGSGNSNRHEGSASMRNSSSYKRKLSRKEVQGLAANLRGVELRR
YCHPRSDPPALNRPCQSHARCPDPKQEELTGSQNVSQRCHSVEVPIEEAAALFCASQHSS
DDDESLLVC
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcttttatccttagctcaggatgacaaaagaatcttctgggaatttcgaatgatggag
acgattggaacctcgccgattcttcgtttaaaatggatatttcgtcaaatagttctgatt
tattttgctggtttcttcattgttcagagaaccgaatctactgcaataacaatggctgcc
tgcaatgggaagctggaacagcacacagaaaggcgtggagttctctacagcccgtcctgg
cctctgagctacccagcggggctgaactgcagctggtatatccagggggaccacggggat
gtcatcactatcagttttaggaactttgacgtagaagagtctcggaaatgtgcttcagac
tggctcctgatgggcccagcctcgaagagggagtacagagtgtgcggctctgtcatcccc
ccaccctttatctccacgcgggaccacgtctgggtattctttcactccgacaccgccagc
tctgggcaggctcagggatttagactatcctacatcagaggtaaacaaggccaaagcagc
tgccagaccgatgaattcctttgcgggaacggcaagtgcattcccagtgcctggaagtgc
aacacgatggatgagtgcggggacgacaccgacgaaaagagctgcgcaccccctccgacc
gagccccaaaccaccatgtgtccctcggggaccttccagtgcaccggagtccactccacg
cagtgcttaaccaacagcctgcgctgcaactccaacaaagactgcagggacggctcggac
gaggaggactgccccgacacgtcctgtgggaagcggctggggaacttctacggctccttc
gcctccccagatttcttccggcgcaaccacagcggatcagacctgcgctgcacctggtac
gtggacacgcaggatccgcggcacatcatcctccagctcgacctgcagctagggtacagc
gactacatccgggtgtacgacggcatgggagaacgcagcgacaagctgctacagactcta
tcctatcacaacaaccgtcgttcagccagcgtagagtcctccagggggcagctcacggtc
ctgtaccatgccaagcccaagagcgcgggccacggcttcaacgccacttaccaggtcaaa
ggttactgcttcccttgggagcacccctgtggcagcgatgagggctgcttcgccgagcac
cagcgctgtgatggctggtggcactgccccaacggcaaggatgaggagaactgccccgct
tgccaaaagggcgagtacccctgcgagggcaacagcgggatgtgctatgcgggcccggac
cgctgcaacaaccagaagaactgccctgacagctcggacgagaagaactgcttcacctgc
cagccaggcaacttccactgcggaaccaacctgtgcatcttcgagacttggcgctgcgac
gggcaggaggactgccaagacggcagcgacgagcacaactgcctggtggcggtgcccagg
aaggtgatcaccgcagcgctcattggcagcctcatctgcgggctgctgcttgtcatcgca
ctggggtgcgcctttaaactatactccctgagaaccagagaatacagggctttcgaaacc
cagatgacccgactggaggcggagtttgtgaggagagaggcccctccctcctatggtcag
ctgattgctcaaggccttataccccctgttgaggactttcctgtatataatccatctcag
gcctcagtcttgcagaacatcaggacggcgatgcggcggcagatccgacggcactcctca
cggagatcttcctcccggaggagactggggcggctgtggagccagctattccatcgtggg
gctcgggtccgggggcagattccactgctgactccccccagcacctcccacacctccctg
agcgggggcatccacagctaccaggcggtggggggcggcggcggacacactccctcctcc
acagcccgggtactggacctggagaccgagtctgaggcctcctgtcagcctggagctttc
cacagggaccgccagcccctggaacactcccctgtggatctctcctctcagtccagcaca
gacgaggctggggaccagacacctggtgaggaggtaagccgtgacttctgtgcaggggca
gccggtgtccacaacgatcctctgtctggacgtatagaagcccctaatacgggtagcggc
aactcaaacagacacgaaggatcagcgtccatgaggaacagtagctcctacaaacggaag
ctctctaggaaagaggtgcagggtctggctgctaacctccgcggtgtggagctgcgtcga
tactgtcaccccaggagtgatcccccagctctgaaccgaccctgccaaagccatgcccgc
tgcccagaccccaagcaggaggagctcactggaagccagaatgtaagtcaaaggtgccac
tctgtggaagtgccaatagaagaagcagctgcgctgttctgcgccagccagcacagcagt
gacgatgatgagtcccttcttgtttgctga
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