Polyodon spathula (Mississippi paddlefish): 121296735
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Entry
121296735 CDS
T07273
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121296735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121296735
03041 Spliceosome [BR:
pspa03041
]
121296735
03036 Chromosome and associated proteins [BR:
pspa03036
]
121296735
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121296735
Spliceosome [BR:
pspa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121296735
Complex B
121296735
Complex C
U2 SnRNP specific factors
121296735
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121296735
TFTC complex
121296735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
121296735
NCBI-ProteinID:
XP_041078462
LinkDB
All DBs
Position
21:53237..67682
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGALEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEETDNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGEKGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGATLDLVQLEQNEAAFSVTVCKFANGG
EDWYVLVGVARDLILNPRSVGGGFIYTYRLVSGGEKLEFMHKTSVEDVPSAIAPFQGRVL
ISIGKLLRIYDLGKKKLLRKCENKHVPNLITGIYPMGHRVIVTDVQESLFWIRYKRNENQ
LIIFADDTHPRWLTTACLLDYDTMASADKFGNISIVRLPPNTNDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEYPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPNKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacctgacccttcaaagagccactggcatcagtcatgctatccatgga
aacttctcagggacgaagcagcaagaaattgttgtttccagggggaagatcctggagttg
cttcgcccagatgccaacactggcaaggtgcacactctgctcaccatggaggtgtttggg
attatccgctccctcatggctttcaggctgacgggcgggaccaaagactatattgtggtg
ggcagcgattcggggagaatcgtcatcctggagtaccagccctccaagaacgtgtttgag
aaggtgcaccaggagacctttggcaagagtggctgtcgacgcatcgtcccgggccagttc
ctggctgtcgaccccaagggcagggctgtcatgatcggagcgcttgagaagcagaagctg
gtgtatatccttaacagagacgctgctgctcgtctcaccatctcttcccctttggaggca
cacaaggccaacaccctggtttaccacgtggtgggggtggatgtgggcttcgagaacccc
atgtttgcatgcctggagatggactacgaggagacagataatgacccgacaggggaggct
gccgctaacacccagcaaaccctgaccttctacgagctggacctgggcttgaaccacgtg
gtgcgcaagtacagtgaggccctggaggagcacgggaacttcctcatcacagtcccggga
ggatctgatggccccagcggagtgctgatctgctctgagaactacatcacctacaagaac
ttcggggaccagccagacatccgctgtcccatcccacgcaggaggaatgacctggacgat
ccagagcgtgggatgatctttgtctgctctgccacgcacaagaccaagtccatgttcttc
ttcctggcgcagactgagcagggagacatcttcaaagtcaccctggagacagatgaggag
atggtgacggaaatccgtttgaagtactttgacaccattcctgtggcaacctccatgtgc
gtgctgaaaacgggcttcctctttgtgtcctcagaattcgggaatcattacctgtaccag
atcgcacacctgggggatgatgatgaggagccagagttctcatctgctatgccgctggag
gagggagacaccttcttcttccagccgcggccgctgaagaacctggtgctggtggatgag
caggagagcctctcccccatcatgagctgccagattgctgatctggcaaatgaggacacg
ccccaactgtacgtggcctgtggcagggggcccaagtccaccctgagggtactgaggcac
ggactggaggtgtctgagatggctgtctccgagctgcccggtaatcccaatgcagtgtgg
acagtgagacgtcacattgaagacgagtttgacgcctacatcattgtgtcctttgtgaac
gccacgctggtgctgtccattggggagactgtggaggaagtgactgactctggcttcctg
ggcaccactcccaccctgtcctgctcactgcttggggaggacgcactggtgcaggtatac
ccagacgggatccgtcatatccgggcagacaagagagtgaacgagtggaagactccgggc
aagaagacgattgttcgctgcgctgttaatcagaggcaggtggtgatcgcgctcactggg
ggagaacttgtctactttgagatggacccgtctggccagctgaacgagtacacggagcgc
aaggagatgtccgcggatgtggtctgcatgagtctggccaacgtgcctccgggagagcag
cgctcgcgcttcctggctgtggggcttgtggacaacactgtgaggatcatctccctcgac
ccctctgactgcttgcagccgctcagtatgcaggcgctgccggcccagcctgagtccttg
tgcatcgtggagatgggtggcacagagaagcaggatgagctgggagagaagggcagcatc
ggcttcctgtacctcaacatcggcctgcagaacggcgtgctgctccggaccgtgctggac
cctgtcacaggcgatctgtccgatactcgcacccgatacctgggctctcgcccagtgaag
ctcttccgtgtcaggatgcagggccaggaagcggtgttggccatgtctagccgctcgtgg
ctcagttactcctatcagtctcgcttccacttgacgccgctgtcctatgagactctagag
tatgcgtctggctttgcctcggagcagtgtccggagggcatcgtggccatttccaccaac
accctcaggatcttggctctggagaagctgggcgcagtgttcaatcaggtggcgttcccc
ctgcagtacaccccacgcaaattcgtcattcaccccgaaaccaacaacctaatcctgatc
gagacggaccacaacgcctatactgaggccaccaaggcacagcggaagcagcagatggcc
gaggaaatggttgaagccgctggagaggatgagcgggagctggcagcagagatggcggct
gcattcctcaatgagaatcttcctgaggcaatcttcggcgctcccaaggcaggcagcgga
cagtgggcctcgctggtgcggctcatcaaccccatccagggggccaccctggacctagtg
cagctggagcagaacgaggcagcgttcagtgtgactgtctgcaagttcgccaatggggga
gaggattggtatgtgctagtgggtgtggccagagacctgatcctgaacccgcgctctgtg
ggcggtggcttcatctacacctaccgcctggtgagcggcggagagaagctggagttcatg
cacaaaacgtcagtggaggatgtcccctctgccatcgcacccttccagggcagggttctc
atttctattgggaagttgctgcggatctacgaccttgggaagaaaaagctgctccgcaag
tgcgagaacaagcatgtcccgaacctcatcacagggatctaccccatggggcaccgcgtg
atcgtgacggacgtgcaggagagcctgttctggatccgctacaagcgcaatgagaaccag
ctgatcatcttcgctgatgacacgcaccctcgctggctcaccacggcctgtctgctcgac
tacgataccatggcctctgcagacaagttcggcaacatcagcattgtcaggttgcccccg
aataccaacgatgatgtggatgaggatcccacaggaaacaaggcactgtgggacaggggt
cttcttaacggggcctcccagaaggcggaggtgatcatgaactaccacatcggggagacg
gtcctctctttgcagaagaccacgctgatccctggaggctcagagtccctggtgtacacc
accctgtctgggggcatcggaatcctggtccccttcacctctcacgaggaccatgacttc
ttccagcatttggagatgcacatgcgttcagagtacccccctctgtgtggccgggaccac
ctcagctttcgctcctactacttccctgtcaagaacgtgatcgacggggatctgtgtgag
cagttcaactctatggaccccaacaaacagaagagtgtgtctgaggagctggaccgaaca
ccacccgaggtctccaagaaactagaggatatccgaactcgctacgctttctaa
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integrated database retrieval system
