Polyodon spathula (Mississippi paddlefish): 121296784
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Entry
121296784 CDS
T07273
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121296784
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Others
Others
121296784
Endosome - Golgi transport
121296784
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
121296784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
SUKH_6
Motif
Other DBs
NCBI-GeneID:
121296784
NCBI-ProteinID:
XP_041078500
LinkDB
All DBs
Position
2:42759089..43055025
Genome browser
AA seq
2854 aa
AA seq
DB search
MASEEKPVPPGLQAGDAGGKEEGTAPLSLNPGVPIRGIKMKFAVLAGLVEVGEVTNRDIV
ETVLNLLVGGQFDLEMNFIIQEIESISCMVELMDKCDKTCQAEVWSIFTAILKKSIRNLQ
ACTEMGLIEQVLKRIDQADSMIADLLVDMLGVLASYSITVRELKLFFSKLQGEKGQWPPH
AVKLLSVLKHMPQKNGPDSFFSFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPINNIN
VDKDKPYLYCFRTSKGQGYSAHFVGGCLIVTSIKSKGKGFQHCVKYDFKPQKWYMVTIVH
IYNRWKNSEISCYVNGELASYGEITWLVNTSDTFDKCFLGSSETADANRVFCGQMGAVYL
FSEAISAAQILAVYQLGPGYKGTFKYKAESDLLFAEHHKLLLYEGKLSSCIAFMYNPRAT
DAQLCLESSPKDNPSIFIHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDYL
QHCSDQVDTTVCSTLLAFVMELLKNSVAMQEQVLACKGFLVIGYSLEKSSKVHVTQAVLE
SFLAFARYLSNVQNGVLLLKQLCDHILFNPAIWIHAPTKVQLQLYTYLSTEFISTVTIYN
AVRRVGTVLQVMHTLKYFYWVVNPLDRSGVTPKGLDWPRPNQKETHSLRAFLLLFVKQLI
MKDYGVKEDELQSILNYLLTIHEDDNLMDVLQLLVALMSEHPGSMVPAFDQRSGIRVIYK
LLASKGEGIRVQALKVLGYFLKHLGAKRKAEVMLGYGLFSLLSERLMLHTNVFTMTTYNV
LFEILTEQICTQVIHKQHPDPDSSVKIQNPQILKVIAALLKNSPQCPESMDVRKVFLSDM
IKLFNNSRDNRRSLLQCSVWQEWMLSLCYINPKNSEEQKITEMVYAIFRILLYHAVKYEW
GGWRVWVDTLSITHAKVTFEQHKENLAQMFREYQRRGGEASAVGNAGLIRTISGISDAEA
VNTTDSPKTVQGQNVEVVPSSETELKTEDNEHATLASKPKAEEEKMEEPVAADASALVTD
SYTAAEDVSTEQVECEKPINKPTAKTLQEFIKDPKNLVELTLTDNPVDEASSADAFLEQV
TSEASKKLEDLIAGTDNIEQKESRNVASANEQIKADNKNQEDSSPGAEKVEVTTGKGDDI
SHPTDEEKAEDTLIQPEPVSDASESELHEGVKQVHTQAEAEVNDQSIKEVEEKSSDETKA
NGGSNAGQGLAESTTSITPTTTATTRTKEIKIARLDVSSVASDTERLELKASTSQESTSP
SESGQGQQEASGSGVQGRDSSARSTMFRIPEFRWSHMHQRLLTDLLFSIETDVQMWRSHS
TKTVMDFVNSSENVIFVHNTIHLISQVVDNIIMACGGILPLLSAATSATHELENIETTQG
LSIEASVTFLQRLISLVDVLIFASSLSFTEIEAEKNISSGGILRQCLRLVCAMAVRNCLE
CQQHTRFKPGVENARGQKAMQSLMGTGKSAPAQSPVDVITGGVSPIRDLDRLLQDMDINR
LRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNEWKPPQRSQSVKSTKSGS
DVAAAIELDKGAVGDNAHAAADFENGSSLRRKDSGIGEEQAFIAASEVEAPAGAGTEAAI
TGPDAVSKVLSTLSSEVKKTQDILEQENKMSSSSADANQGKNVKDILRSLVSMPAEEMVV
DPALIPPAFLGAIGDGATDKSVQFRSFDRSVVVAPKKAGGAPSLAASTVTAATTVHDATA
AAPVNIVSVVSTSDAPHSTATEPAAGSGSASANLPSVPSVSPMTQDYASNMSISERLEHA
LEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQ
NSIQKNAGLAFIELVNEGRLLSHTMKDHLARVANEAEFILSRQRAEDIQKHAEFESQSAQ
YSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIVHILTDKHGAWGSSAPSRPREFWRLD
YWEDDLRRRRRFVRNPFGSTHPEATLKAAVEHAAEEDVLVKGKQSIRSQALGNQNSENEI
LLDGDDDALSSLEDKELENLTGPVNLSTGAQLVAPAVVVKGTLSITASELYFEVDEEEPS
FKKIDPKILTYTEGLHGKWLFTEIRAIFSRRFLLQNTALEIFMANRTAVMLNFPDQATVK
KVVNCLPRVGVGTNFGLPQTRRISLASPKQLYKASNMTQRWQRREISNFEYLIFLNTISG
RTFNDLNQYPVFPWVITNYDSEELDLTLPSNFRDLSKPIGALNPKRAAFFSDRFESWEDD
QVPKFHYGTHYSTSSFSLMWLLRIEPFTTFFLNLQGGKFDHADRSFSSVSRAWRNCQRDT
SDVKELIPEFYYLPEMFVNSNNYNLGVMDDGTVVSDVELPPWAKTPEEFVRINRLALESE
FVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLSSIGDPVLREAVEAQIRSF
GQTPCQLLIEPHPPRSSAMQVYLLLQTPMMFTEQMQQDVIMVLKFPSNSPVAHVAANTQP
GLAAPAIITVTANRLFAVNKWHGLSGHQGSVQDQPYQLPVEIDPLIASNVGTHRRQITDL
LDQSIQIHSQCFVITADNRFILVCGFWDKSFRVYTTDSGKLTRIVFGHRDVVTCLARSES
YIGGDCYVLSGSRDATLLLWYWNGKNSSIGENPGTEFVTPRAILTGHDCEITCAAVCAEL
GLVISGSKEGPCLIHSMNGDLLRTLESPVNSVWPRLIQSSTEGHCVVYYEKGLFCIFSVN
GKLLGHMEVEENVKAILLSRDGQYLLSGGDGGVLTVWQIHNLKQLFTYPGCDAGIRSMAM
SQDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8565 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgaggagaaaccggttcctcctggactgcaggcaggtgatgcgggtggtaag
gaggaaggaactgcgcccctgtccttgaaccccggagttccgattcgggggatcaaaatg
aaatttgcagtactggctggtctggtggaagttggagaagtcacgaacagggacatcgtg
gagactgtcttgaatctgcttgtagggggccagtttgatctggaaatgaatttcatcatt
caagagatagaaagtatttcctgtatggtggagctgatggacaaatgtgacaagacttgc
caggctgaagtctggagcatcttcacagccattctcaagaagagcattcgtaacctgcaa
gcctgtactgagatggggctcatcgaacaggtcctcaagaggatcgatcaagctgacagt
atgatagcagatctgcttgtagatatgctgggtgtcttggccagctacagtataactgtc
cgtgaacttaagctgttcttcagcaaactccaaggagaaaaagggcaatggcctccacat
gctgtgaagttgctgtcggttttaaaacacatgccacagaaaaatggtcctgattcattt
ttcagctttcctggaaagagtgctgcggcaatagctctgcctcccattgcaaagtggccc
taccaaaatggcttcacctttcatacctggctgcgaatggatcccatcaacaacatcaat
gttgataaggataaaccttacttgtactgtttccgaacaagtaaaggacaggggtactct
gcacattttgttggaggctgtttgattgtaacctcaataaaatccaaagggaaaggattc
caacactgtgtgaagtatgacttcaaaccacagaagtggtacatggtaacaattgtacat
atctacaatcgctggaagaacagtgagataagttgctacgtgaacggggaacttgcatca
tatggagaaataacctggttggtcaacaccagtgatacttttgacaaatgtttcttgggg
tcctcggagacggctgatgccaaccgtgttttctgtggtcagatgggggctgtctacctc
ttcagcgaagcaatcagtgctgctcagattctagctgtttatcagctgggtccaggctac
aagggtactttcaaatacaaggcagagagtgaccttctctttgctgaacatcacaagctg
ctgttgtatgaggggaagctgtccagctgtattgcattcatgtacaatccaagagctaca
gatgcccagctttgccttgagtcttcgcccaaggacaacccttctatctttatacactct
ccccatgcccttatgctgcaggatgtgaaggcagttgtaacacactcggttcagagtgcg
atccattccattggaggagtgcaggtgcttttccccttgtttgcacagctggactatctg
cagcactgctctgaccaagtggacaccaccgtctgttccactctgctagcatttgtcatg
gagctgctgaagaactctgtcgctatgcaagagcaagtccttgcctgcaagggctttctt
gtgattgggtacagtctggagaagtcttccaaagttcatgtcacccaggctgtgctggag
tcattcctggcctttgccaggtacttgagtaacgtgcagaatggagtgcttttgctcaag
cagctttgcgaccacattctcttcaatccagccatctggatccatgctccaaccaaggtg
caactgcaactgtacacctacctgtcaacggagttcatcagcactgtgactatctacaat
gcagtccgcagagttgggactgtactgcaagtaatgcacacactgaaatacttctactgg
gtggtgaaccctctagatcgcagtggagttactccgaaaggcttggattggccaagaccc
aaccagaaagaaacccattccctccgtgcgtttctgttgctctttgtaaaacagttaata
atgaaggattacggtgtgaaggaagatgagctgcagagtattctgaactacctacttacg
attcatgaggatgacaacttaatggatgtcctgcagctgctggttgcgttgatgtctgaa
catccgggctccatggtcccggcctttgatcaacgcagtggaatacgagtcatctataag
cttcttgcatcaaaaggtgaagggattcgagtacaagccttgaaagtgttgggttacttt
ttaaaacatttaggggccaagaggaaggctgaagtcatgcttgggtatgggttgttttca
ctgctctccgagcggctgatgctccataccaatgtattcacaatgactacgtataatgtc
ctgtttgagatcctcacagaacagatctgtacccaggttatacacaaacaacatcctgac
cctgactcatcagtaaagatacaaaacccacaaatcctcaaggtgatagcagccctgctg
aagaattccccccagtgcccggaaagcatggatgtccgcaaagtcttcttgtcagacatg
atcaaacttttcaataacagccgggataaccggaggagtttactgcagtgttcagtgtgg
caggaatggatgctctctctgtgctacatcaaccccaagaactcggaagagcagaaaatt
acagaaatggtctatgccatcttccgaatcctgctctaccatgcagttaaatatgaatgg
ggaggctggcgcgtctgggtggatactctttccatcacccacgccaaggttacttttgaa
caacacaaggagaaccttgctcagatgttcagagagtaccaaagacgagggggtgaagct
tctgctgtaggaaatgcgggcctcatcagaactatctctggtatcagcgatgcagaagct
gtgaacaccacagattctcctaaaacagttcagggccagaatgtggaagtggtgccttcc
tctgagactgaacttaagactgaagacaacgaacatgctactttggcctctaaaccaaaa
gcagaggaagagaaaatggaagagccagtagctgctgatgcatctgctttagtgaccgat
tcatatacagctgcagaagatgtttccacagagcaagtggaatgtgagaagccaattaat
aaacccacagccaaaacactgcaagaatttataaaggatcccaagaacctggtggagctt
acattgacagataaccctgtggatgaagccagctcagcagatgccttcctggagcaagtt
acatcagaggcttctaagaaactggaggacttaattgctggaacagacaacatagaacag
aaagaaagtagaaatgtggcttctgcaaatgagcaaatcaaggctgataataaaaatcaa
gaagactcatccccaggagcagagaaggtggaggtcacaacagggaaaggtgatgacata
tctcatcccacagatgaggaaaaggctgaagacacgttgatccaaccagaacctgtctct
gatgcctctgagtctgaactgcatgaaggtgtgaagcaggtacatacacaggcagaggca
gaagtcaatgatcagtccattaaggaggtggaagagaagagcagtgatgaaacaaaagct
aatggtggcagtaatgcaggtcaaggtcttgctgagagcaccacctccatcacccctaca
accactgctaccaccaggaccaaagagatcaagatagcgagactagatgtttcaagtgtg
gcatctgacactgaaagactggagctgaaagcaagcacaagccaagagtcaacttcacca
tcggagtctggtcaaggacaacaagaagcctctggttctggtgtacaggggagagattct
tcggcaaggtccacaatgtttcgcatccctgagttcaggtggtctcacatgcaccagcgc
ttgctcaccgatctgctgttctccattgagactgatgtacaaatgtggaggagtcattcc
acaaagacggtgatggattttgttaacagcagtgaaaatgtcatcttcgtgcacaacact
attcatctgatctcacaagtggtagacaacatcatcatggcttgcggtgggatcttgcct
ctattgtcagcagccacctccgctacgcatgaattggagaacatcgagacaactcagggt
ctttccattgaggcttctgtaaccttcctccagagactgattagccttgtagacgtgctg
atttttgctagctctcttagcttcaccgaaattgaggcggaaaagaacatctcatcagga
gggattctgagacagtgcctcagattggtgtgtgcaatggctgtaagaaactgtttggaa
tgccagcagcacacccgtttcaagcctggtgttgaaaatgccaggggacaaaaagctatg
caaagtttaatgggaacgggaaaatctgccccagcacagagcccagtggatgttatcaca
ggtggtgtttcacctataagggatcttgatcggttgctacaagacatggatataaaccgt
ctacgtgccgtggtcttcagagatatcgaggacagcaagcaggcccagtttctagccttg
gctgtagtgtacttcatttcagtgctcatggtatcgaagtacagggacatcctggaacct
cagaatgaatggaagcctccacaacgtagccaatcagtgaagagcacgaaaagcgggagc
gatgtggccgcagctatagagctggataagggtgcagttggggataatgcccatgctgct
gctgattttgagaatggctcttctttacggagaaaggattctggtattggagaggagcag
gccttcattgctgccagtgaagtggaagccccggcaggggccgggactgaggctgccatt
actgggcccgatgccgtcagtaaggtgctgtccaccctctcctctgaggtgaagaaaacc
caggatatcctagagcaggagaacaagatgtcctcttcatcggctgatgccaatcagggc
aagaacgtgaaggacatacttcgcagtctggtcagcatgccagctgaggaaatggtagtc
gacccagccctcattcctccagcattcttaggagctataggagatggtgcaacagataaa
tctgtacagttcagatcgtttgacaggagtgttgtggtagctcccaagaaggcaggcgga
gctccatctttggctgctagtacagtaactgctgccacgacagtccatgatgccaccgct
gctgcccctgttaatattgtcagtgtggtctccacatcggacgctccccacagcacagca
acagagcccgctgctggaagtggatctgcaagtgcaaatctaccatctgttcccagtgtg
tccccaatgacacaagattatgcttcaaatatgagcatttctgaaaggcttgaacatgcc
cttgaaaaggctgcacctcttctgagggagatcttcgtagattttgctcccttcctttcc
cgtacccttctgggcagccatgggcaggagctgctcatagaaggtacaagtttggtctgc
atgaagtccagcagctcggttgtggagctggtcatgctgctgtgttctcaggaatggcag
aactccattcagaagaacgctgggttggcctttattgaacttgtcaacgaggggaggttg
ttgagtcacactatgaaagatcacctggcgagggttgcaaacgaggcagagttcatactt
agcagacagagggcagaggatatccagaagcatgccgagtttgagtctcagagcgcccag
tattcagcagaaaaacgagatgaagagaagatgtgtgatcatttgatacgcgcagccaaa
tatcgggaccacgtgacggcaactcagctgatccagaaaatcgtccacatcctcacagac
aagcatggagcctgggggagctctgctccaagtcgtcctcgtgagttctggcgcctcgac
tactgggaagatgacttgcggcgccggcgacgttttgtgcgcaacccctttggatcaaca
catcccgaagccacactcaaagcagcagtagaacatgctgccgaggaagatgtcctggtg
aaagggaagcagtcgatcagaagccaagctttggggaatcaaaattcagaaaacgagata
cttctggacggggacgatgacgccctatcatccttggaggataaagaattggaaaactta
accggtccagtaaacctgagcactggagcccagctggttgctccagctgtagtggttaaa
gggaccttgtccatcacggcttctgaactttacttcgaagtagatgaagaggagcccagc
tttaagaaaatcgatccaaagattctcacctacactgaaggactccacggaaaatggctc
ttcacagagattcgggccatcttctcaaggcgctttttgctacagaacactgcgctggaa
atattcatggcaaacagaactgctgtcatgctcaactttccagaccaggctacagtaaag
aaagttgttaactgcctaccgcgtgttggagttggaacgaattttggtttaccacagacc
aggcgtatcagtttggctagccctaaacaactctacaaggcttctaacatgacccagcgc
tggcaacgcagagagatctcaaactttgaatacctcatcttcctcaacacaatttctgga
cggactttcaacgacttaaatcagtaccccgtgtttccttgggttatcaccaactatgat
tcagaagagctggatttgacgctgcccagtaatttcagagatttgtccaagcccatagga
gctctcaacccaaagagagcagccttcttctctgatcgctttgaatcctgggaggatgac
caagtcccaaagtttcactatggcacccattattcaacttcaagcttctcactcatgtgg
ctgctgagaatagagcctttcaccacatttttcctgaacttgcaaggggggaaatttgac
catgcagacaggagtttctcttctgtgtcaagagcatggcgcaactgccagagagacacc
tccgatgtgaaggaattgattcctgaattttattatcttccggagatgtttgtcaactct
aacaattacaatctgggagtgatggatgacgggacagtggtgtctgatgtcgaacttcca
ccatgggctaaaaccccagaagagtttgtccgcataaatagactggcccttgagagcgag
tttgtctcctgccagctacaccagtggatagacctgatttttggatacaagcagcaaggt
ccagaggctgtccgggcactcaatgtcttttactacctaacgtacgaaggagctgttaac
ctcagctccattggcgatccggtgctaagagaggctgttgaagctcagatccgaagtttt
ggacaaaccccttgtcagctgctaatagaaccacatcccccgaggagttctgccatgcag
gtgtatctcctcctgcagacaccaatgatgttcactgaacaaatgcagcaggatgtcatc
atggtgctcaagtttccgtccaactcccctgtggctcatgtggccgcaaacacgcagcct
gggctggctgcacccgccatcatcactgtcaccgccaacagactgtttgctgtgaacaag
tggcacgggctcagtggccatcaaggctctgtccaggaccagccctaccagctgccagtg
gaaatcgatcctctgatagccagcaacgtcggcacccacaggaggcaaatcactgacctt
ttggaccagagcattcagatccattcccaatgttttgtgatcaccgctgacaaccgattc
atcctggtctgtggcttctgggataagagtttccgtgtctataccactgactcaggtaaa
ctgactcggatagttttcggacaccgagacgtggttacatgcctggccagatctgaatcg
tacatcggtggagactgctacgttctctcggggtcccgagatgccaccctcctgctctgg
tattggaacggcaagaacagcagcattggagaaaacccaggcaccgagttcgtcacaccc
agagctattttgacgggacatgactgtgagattacctgtgcagctgtgtgtgctgaactg
ggcctggtcattagtggctccaaagagggtccatgcctgatacattctatgaatggagat
ctcctgcggaccctggaaagcccggtaaactctgtatggccgagactcatccagtcctct
actgaagggcactgcgtggtttactatgaaaagggtctcttctgcattttcagtgtgaac
gggaagctgctgggccacatggaagtggaggaaaatgtcaaggcaatactgttgagccgt
gatggacagtacctactttctggaggagatggaggagtgctgacagtctggcagattcac
aaccttaagcagctgttcacataccccggatgtgatgctgggatcaggtcaatggccatg
tcacaagaccaaaggtgtataattaccggcatggcctctggaagcatagtactattttac
aatgacttcaaccggtggcatcacgaatatcaaacaagatactga
DBGET
integrated database retrieval system
