Polyodon spathula (Mississippi paddlefish): 121296922
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Entry
121296922 CDS
T07273
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121296922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121296922
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121296922
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAP80_UIM
TRAF6_Z2
Motif
Other DBs
NCBI-GeneID:
121296922
NCBI-ProteinID:
XP_041078772
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All DBs
Position
22:1529557..1539762
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AA seq
910 aa
AA seq
DB search
MPRKRRNPSGEEMAVSRRTRQRTNTNKNTNQSIVISDSENEEGDRGLVQRQDGRLREREK
IKRHSPEMTEEQMLDLAVRMSEQEASQTREEEEALRKAIEESLCENRVSHKADQSRPAGV
QQNLGNKGKEKTHSTEPDASLLGDSQRESILGKVNPRERSPILVLEKLSQDVVGSCQELG
FIECSQDCPLTVTPLSAKRTSEGNQLKRKFRRTDPVGSSRADGGEGSSANLCSGKRRGQQ
GSTTPQELETCQHPADTPHWPPEKEKRTCRKTEQNRSPLRMEEDASLKVITLDDFQDSES
LLSSSNGPQCLQSGEQSPVLMMGSQDMVGNCQEMSSLTCSLTCSQSLLTFSPLKNPLPSM
NQDSPYPKSPTFPKKKNEENRLSRTFSRRDTVHPNRADRGESSSANLASSDGRVKQGSTP
PQEPETSQHCSAAYSENSNTPLSCPSTQVDIEGAGSMSRGEGAVHYYWGVPFCPQGLNPD
DYTKVILCQLEVYEKSLKQAQRGLLRKAEWGEPVLTASHETLSSRRTSLSRLGKGAGNSR
SFQGIQSPRHSEQEEGEEKSSQHDKEGRERREEEEQQEEETSNSQQQAVSMASSAMIRAE
GTTETWLNLRRRRGLRERSPREPEEQQEQRVEEEEEEMDLDICPESQLSEESSQPLLKDT
PAGTQCLEDVVEKPGSAPVLQRGQRVECPICMQSFPKNRIEMHAAYCDGTRESEEVEEET
ASQVMSLRRSIRKAGSSDAAEPSTSCSDRSAQKEKCYICQDWISIKEYQSHVDNCISRGR
NWKSKKLLAALEHSERKDSGNAEVGTSDSFINHREDGGLVSCLDDEEQEPGSGGDEPACP
FQLSDSPIRSFVPISQATDCLVDFKKQLTGPTEGHKRKNFITKIGKILTPRSHAFLQVND
EATRDEDRSK
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcaagaggcgaaatccctcaggggaagagatggccgtttctaggaggacgagg
cagcgcaccaataccaataaaaacacgaaccagtctatagtcatttctgacagcgaaaat
gaggaaggagatcgtggattggtgcaaaggcaggacggacgtttgcgggaaagagagaaa
ataaagcgacacagcccagagatgacagaggaacagatgctagacctggcagtgagaatg
agtgaacaggaggccagtcaaacacgcgaagaagaggaggccctgaggaaggctattgaa
gagagtctttgtgaaaacagagtttcccataaagcggaccagagcagaccagcgggtgtt
caacaaaacctagggaataaaggaaaagaaaaaacgcactccactgaaccagatgccagt
cttctgggagactcccagagggaatccatcctcgggaaggttaatcctagagagcgaagc
cccattctcgtcttggagaagttgagccaagatgtggttggcagctgccaggagttgggt
ttcatcgaatgttcacaagactgtcctttgacagtaacacctctatctgctaaaagaacg
agcgaggggaaccaattgaaacgtaaattccgaaggacagatccggtaggcagcagtcga
gccgacggaggggagggctcgtcagcaaacctgtgcagcggcaagagaagagggcagcag
ggcagcacaactcctcaggaactggagacctgccagcatcctgcagacaccccccattgg
cccccggagaaggaaaaaagaacctgccgtaaaactgaacagaacagatcccccctaagg
atggaagaggatgcttctctaaaagtcatcacgttggacgacttccaggattctgagtcc
ctcttgagtagtagcaatggtccccagtgcttgcaaagcggcgagcagagtcccgtactt
atgatggggagtcaagacatggttggcaactgccaggagatgagttccctcacctgttcc
ctcacttgttcacaaagtcttttgacattctcgcctttgaagaatcctctgccttccatg
aatcaggattctccctatcctaagagtcccacattccctaaaaaaaagaacgaggagaac
cgcttgagtaggacattctcaaggagagacacggtacacccaaatcgagctgacagagga
gagagctcttcagcgaacctcgccagcagtgatggaagagtgaagcagggcagcacacct
ccccaggaaccagagacctctcagcattgttcagcagcctacagtgagaactcaaacacc
cctctcagctgcccctcgacacaagtggatatagagggggcaggtagcatgtcccgggga
gagggcgcggtgcactattactggggtgtccccttctgcccccagggtttgaacccagac
gattacaccaaggtgatcctgtgccagctggaggtgtatgagaagagcctgaagcaggct
cagagggggctgctgcgcaaggcagagtggggggagcccgtgctcacagcctcccatgaa
acactctcctcccgcaggaccagtctctcccgactgggcaagggggcaggtaacagccgg
agctttcagggcattcagagccctcggcacagcgagcaggaggaaggagaggagaagagc
tctcagcatgacaaggagggcagagagagaagagaggaggaggaacaacaggaagaggag
acatccaactcgcagcagcaggcagttagtatggcatcttcagcaatgatcagagcagaa
ggcaccacggagacctggctgaacttgagaaggagacgtggcctgagggagaggagcccc
agagagccagaggagcagcaggaacagagagtagaggaggaggaggaagagatggacttg
gacatctgtccagaaagccagctcagtgaagagtccagccagcctctgcttaaagatacc
cctgcagggacacagtgcctggaggatgttgtagagaagccaggctcagcccccgtctta
cagagaggacagcgtgtggagtgtccaatctgcatgcagagcttcccaaagaaccgcatt
gagatgcacgcagcctactgtgatggaaccagggaatctgaggaggtggaggaggagact
gcctcacaggtgatgagcctgagacgaagcatcaggaaagcaggctcctcggatgctgct
gaacccagtacgtcctgctctgacagatcagctcagaaggagaagtgctacatctgccaa
gactggatttcaataaaggagtaccagagccacgtcgacaactgcattagcaggggcaga
aactggaaaagcaagaagctcctggctgctttagagcattcagaacgtaaagattcagga
aatgcagaggttggcacttcagattcctttatcaaccacagagaagacggtgggcttgtc
tcgtgcctggatgatgaggagcaggagcctggcagtggtggggacgagcctgcttgcccc
ttccaattgagcgattctcccatcagatcctttgtgcccatctcccaagccacggactgc
ctcgttgacttcaaaaagcaactaacggggccgactgaagggcacaagaggaagaatttc
attaccaaaataggaaagatcctgacacccaggagtcatgcattcctacaagtaaatgat
gaggctacacgcgatgaagataggagcaaatga
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