Polyodon spathula (Mississippi paddlefish): 121297022
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Entry
121297022 CDS
T07273
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121297022
03036 Chromosome and associated proteins [BR:
pspa03036
]
121297022
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121297022
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
121297022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
LSM_int_assoc
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
RRM_occluded
HAT_Syf1_CNRKL1_C
RRM_7
Lsm_interact
FAT
SNX17_FERM_C
Motif
Other DBs
NCBI-GeneID:
121297022
NCBI-ProteinID:
XP_041078971
LinkDB
All DBs
Position
22:complement(26654304..26665502)
Genome browser
AA seq
938 aa
AA seq
DB search
MAAAVSEEETQLQEMEEEAGASAAVEEEKELESEDEEEMGPDGSDAEGDESSDDEKENQA
EIQRLEEQLSINAFDYNCHVDLIKLLRQAGELVKLRRARQKMSELFPLTEEIWLAWLKDE
IRMAEEESDREKVYELFENAAKDYICPEIWLEYAQYSIGGIGSQGGIEKVREIFDRALTA
VGLHMTKGAAIWEAYREFENAILGTLQPAPGSVPTPEQQEVLNAQLNRIHTLFRRQLAIP
FLDMEVTYAEYGEWSDKPIPGSVTQLYKKALQQMEKSKPYEEALLVAEPPKLAEYQTYID
YELKEGDPARIQTIFERAVAENCLVPDMWAKLTQYLDRQLKIKDLVLSSHDRAVRNCPWT
VGLWKSYLLALERHGAEHKTVSDIFEKALNAGFIQATDYVHIWQAYLDYLRRRVDFSKES
SKELEELRSAFARALDYMKQDVEERFGESGDPSCMIMQNWARVEALHCKNMQKARELWDS
IMTKGNAKFANMWLEYYNLERCHGDAQHCRKALLRAVQCTSDYPEHVCEVLLSFERVEGT
LEDWDTAVQKTETKLSRVREQRAKDTEKEALLAKQEEEKAEQKRKKKAQKKKAGRAGEKR
KAEEEEEDDEDEWGDESEQPAKKLRGEGDETMETESGMFSRKAPFQKTSQVPAAQKARAA
ARPAQQVPHDSRKDHLSVFVSNLPFSLEDPEQKLRDVFQSCGPIEQVRPIYNPQGTFRGY
CYVQFESQICVQEALKLDRKEIDGRPMFVSPCIDKNKNPDFKVFKYSTSLERHKIFISGL
PFSCTKEQLEGMFKEHGTVKDTRLVTNRSGKPKGLAYVEFENEAQASHAVLKMDGTVFQN
HTLNVAISNPPRRNLSDKPESSKAMGSMMPPQVFGVRGRGRTQLSLLPRALHRQSAPESK
TENGTLQSRSGEPVQETSATAPQKQMSNADFSRLLMKK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcggttagcgaagaggagacgcagttgcaagagatggaggaagaggcgggg
gcgtcagcggctgtcgaggaagagaaggagctggagtccgaagacgaggaagaaatggga
cccgatggttctgatgcagagggagacgagtcctcggatgacgaaaaagaaaaccaagcg
gagatccagcgtttggaggagcagctgtccatcaatgcatttgattacaactgccatgtg
gacctgattaagctactgcgccaggcaggggagctggtgaaactacgccgggctcggcag
aaaatgagcgagctcttcccgctcactgaagaaatctggctggcctggctgaaggatgag
attcgcatggcagaggaagagtctgaccgagagaaagtgtacgagctctttgagaatgcg
gccaaggattatatctgtcctgaaatctggctggagtatgcacagtactctattgggggg
attggaagtcaaggggggatagagaaggtacgggaaatctttgacagggctctgactgct
gtggggctgcacatgaccaagggagcagctatctgggaagcctacagggagtttgagaat
gccattctgggaactttacagccagcaccaggtagcgttcccactccagaacagcaggag
gtgctgaacgcacagctgaaccgaatccacacactgtttcgacggcagctggctatccct
ttcctagatatggaggtcacatatgcagagtatggagaatggtcagacaagcccattcca
ggctccgttactcaactttataagaaggcactacagcagatggagaaaagcaagccgtat
gaggaggccttgcttgtagctgagccacccaagcttgctgaataccagacctacattgat
tatgagttgaaggaaggggacccggctcgaattcagaccatctttgaacgggcagtggct
gagaactgccttgtgcctgacatgtgggccaaactgacccagtacctggatagacagttg
aagattaaagacttggtgctctcctctcacgaccgggctgttaggaactgtccttggacg
gtgggactctggaagagttaccttctcgctttggaaaggcatggagctgaacataaaact
gtgtcagatatctttgaaaaagccctgaatgctggcttcatccaagcaacagactacgtg
catatctggcaggcgtaccttgactaccttagaaggcgagtggatttcagcaaagagtcc
agtaaggagctggaggagctcaggtctgcgttcgctcgggctcttgattacatgaagcag
gacgtggaggagcgttttggtgaaagcggcgacccctcttgtatgataatgcagaactgg
gcaagggtggaggcattacactgtaaaaacatgcagaaggccagggaactgtgggatagc
atcatgacaaaagggaacgccaagtttgccaacatgtggctagagtactacaatctagag
aggtgtcacggggatgcacagcactgcaggaaggctttgcttcgagctgtccagtgcacc
tctgactaccctgaacacgtgtgtgaggtcctcctttccttcgagagggtggagggtact
ctagaggactgggacacggctgtgcagaaaacggaaaccaaactgtccagagtcagagag
cagagagccaaagatacagagaaagaagctctccttgccaagcaggaggaggaaaaggct
gagcagaagaggaagaagaaagcacagaaaaagaaagcggggcgagctggagagaagagg
aaggctgaggaggaggaggaggatgatgaggatgagtggggagatgagtcagaacaaccc
gccaagaagctccggggtgagggggatgagacgatggagacagagagtgggatgttcagt
cggaaggctcccttccagaagacctcacaagtgcctgcagctcagaaagccagggctgca
gccaggccagcccagcaggtcccccacgacagccgcaaggaccatttgagcgtctttgta
agcaacctgcccttcagcttggaggaccctgagcagaagctgcgggacgtttttcagagc
tgcgggcccattgagcaggtccgcccaatctacaacccccagggcaccttccgcgggtac
tgctacgtgcagtttgagagccagatctgtgtgcaggaagcgctgaagctggaccggaag
gagatagatggcaggcccatgtttgtctcgccctgtattgacaagaacaagaacccagac
ttcaaggtgttcaaatacagcacttctcttgagagacacaagatcttcatctctggcctg
cctttctcttgcactaaagaacagctggaggggatgttcaaagaacacggcacagtcaaa
gatacccggctggtcactaaccgttctgggaagccaaagggcctggcatatgtggagttt
gagaacgaagcgcaggcctcccatgcggtgctgaagatggacgggacggtgttccagaat
cacaccctgaatgtggccatcagtaacccgccccggaggaacctctcagacaagcccgag
tccagcaaggcgatgggatccatgatgccaccacaggtctttggagtaagagggaggggt
cgcacacagctgtctctgctaccgagagcattgcatcgtcaaagtgccccagagtcgaag
acagagaacgggacactgcagagccgatctggagagcctgtgcaagagacctcagcgaca
gcaccacagaaacagatgtccaatgcggacttctccagattattaatgaagaagtaa
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