Polyodon spathula (Mississippi paddlefish): 121297025
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Entry
121297025 CDS
T07273
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
pspa04144
Endocytosis
pspa05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121297025
04142 Lysosome
121297025
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121297025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121297025
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121297025
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121297025
Exosome [BR:
pspa04147
]
Exosomal proteins
Proteins found in most exosomes
121297025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
121297025
NCBI-ProteinID:
XP_041078974
LinkDB
All DBs
Position
22:complement(29353345..29379905)
Genome browser
AA seq
1677 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGDQAQVVIIDMSDPTT
PIRRPISADSAIMNPTSKVIALKDAAKTLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTV
ALVTETAVYHWSMEGDSQPLKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFADFKIEGNAKPSTLFCFAVRSLAGGKLHIIEVGQPAAG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHMYDLESGVCIYMNRIS
AETIFVTAAHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAIRSNLAG
AERFTLLFARKFNTLFTQGNYSEAAKVAASAPKGILRTADTIRKFQGVPAQPGQASPLLQ
YFGILLDQGQLNKFESLELCRPVLGQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLAL
SVYLRANVPSKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFSQML
VQDEEPLANINQIVDVFMENNLVQQCTSFLLDALKNNRPAEGHLQTRLLEMNLVHAPQVA
DAILGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFG
ALSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLG
SIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESSCYDPDRVKNFLKEAKLTDQLPLII
VCDRFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVV
RGQFSTDELVAEVEKRNRLKLLLPWLESRIHEACEEPATHNALAKIYIDSNNNPERFLRE
NTFYDSSVVGKYCEKRDPHLACVAYERGECDLELIKVCNENSLFKSEARYLVRRKDPELW
ANVLEENNPFRRQLIDQVVQTALSETQDPEEVSVSVKAFMTADLPNELIELLEKIVLDNS
VFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD
VNTSAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSA
YMEVVQAAGKNSNWEDLVKFLQMARKKARESYVETELIFALAKTNRLSELEEFVSGPNNA
HIQQVGDRCYDDGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKASSTRTWKEV
CFACVDGSEFRLAQICGLHIVIHADELEELISYYQDRGYFEELIALLEAALGLERAHMGM
FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII
TMMNHPSDAWKEGQFKDIIAKVANVELYYKALQFYLDYKPLLINDLLVVLSPRLDHTRAV
SFFAKMNQLQLVKPYLRSVQNHNNKGVNESLNNLLTEEEDYQGLRASIDAYDNFDNISLA
QRLEKHELIEFRRIAAFLYKGNNRWKQSVELCKKDRLYKDAMQYAAESKDTELAENLLQW
FLEEGKRECFASCLFTSYDLLHPDVVLELAWRHDIMDFAMPYFIQVMREYLTKVDKLEET
ESLRKTEEEVAEPTPIVFGQQLMLTAGSSPVPPPAGYPAYGYAAPGFASQSAYGYNM
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatccttccaatacgatttcaggaacatctgcagttgcagaacctgggggtg
aacccagccaacattggcttcagctacctgacgatggagtctgacaagttcatctgtatt
cgggagaaggtaggagaccaggcccaggtggttatcatcgacatgagtgaccccacgacc
ccaatcaggcgccccatttctgcagacagtgccataatgaatccgaccagcaaggtcatc
gctttgaaagatgctgcaaaaactctacagatctttaacattgagatgaagagtaaaatg
aaagctcacacaatgacagaagaggtaatgttctggaaatggatctctgtgaacactgtt
gccttggtaacggagacagcggtctatcactggagcatggagggtgactcccagcccttg
aaggtgtttgacagacatgccagtttagcaggatgccagatcatcaactaccgaactgac
gagcagcagaaatggctgcttctgattggaatctctgcacagcaaaaccgtgtggtaggt
gccatgcagctgtactctgtagacaggaaagtgtcccagccaatcgaagggcacgcagca
gcatttgctgacttcaagattgaaggaaatgccaaaccatcaactctcttctgctttgct
gttcgcagtctggccggaggcaagctgcacattattgaagtaggtcagcctgcagctggg
aaccaaccctttgctaaaaaagctgtggatgttttctttccccctgaggctcagactgac
tttcctgtggcaatgcagatcggaaccaagcacggtgtgatctatctcatcaccaagtat
ggctatatacacatgtatgacctggagtctggggtctgcatctacatgaaccgcatcagc
gcagagactatctttgtgactgccgcgcatgagcccacctctggaatcattggcgtcaat
aagaaaggacaggtgctgtctgtatgtgttgaggaagaaaacattgtgaactacgctacc
aacgtccttcagaacccagaccttggactgcgcatggccatccgcagcaacctggcaggt
gctgagaggtttaccctgctcttcgctcggaaattcaacacgctcttcactcaaggaaac
tactccgaggctgccaaagtagctgcctctgcaccaaagggaatactgcgtactgccgat
accatccggaaattccagggtgtcccggcgcagcctggccaggcctctcctctgctccag
tacttcggcatcctgctggatcaagggcagctgaataagtttgagtcgcttgaactgtgc
cgacccgttctggggcagggcaggaaacagcttttagaaaaatggctgaaagaggacaag
ctggagtgctcagaagagctgggcgacctggtaaagactgctgacccaaccctggctctc
agtgtctacttgcgtgccaatgtgcccagcaaggttattcagtgttttgctgaaactgga
cagtttcagaaaattgtgctctatgctaaaaaggttggctacacaccagactgggttttc
ctgctgagaaacgtgatgcgggtgagcccggaccagggactgcagttctctcagatgctg
gtccaggacgaggagcctttagccaacatcaaccagattgtggatgtgttcatggagaac
aacctggttcagcagtgcacctcattcctgttggatgctctgaagaataaccgtcctgct
gaaggacatctacagactcgacttctggaaatgaatcttgtacatgcgccacaggtagct
gacgccattcttggaaaccagatgtttacgcactatgaccgtgcccacgttgcacagctc
tgtgagaaggcaggcctgctgcagcgagccctggagcactacacggacctgtatgatatt
aaacgtgctgtcgttcacacccatctcctgaacccggagtggctggtgaacttctttggg
gctctgtcggtggaagactctgtagaatgcctgcgagccatgctctctgcgaacatccgg
caaaacctgcagctgtgtgtacaggtggcatcaaagtaccacgagcagcttgggacgcag
tccctggtggaactgtttgagtcctttaagagctatgaaggactgttctatttcctgggc
tctattgtaaacttcagccaggacccggatgtgcatttcaaatacattcaagcagcctgc
aaaacgggtcagatcaaagaggtggagcggatctgccgggaaagcagctgttacgacccg
gaccgtgtcaagaacttcctcaaggaagccaagttaactgaccagcttcctctaataatt
gtgtgtgatcggtttgacttcgttcacgacctggttctctacttgtaccgcaacagtcta
cagaaatacattgaaatctatgtgcagaaggttaaccctagccgtcttccagtagtcatt
ggaggcctgcttgatgtggattgcgctgaagatgtgattaaaaacttgatcatggtggtg
aggggacagttctccactgatgagctggtcgctgaagtggagaaaagaaaccggctgaag
ctgctgcttccttggctggaatcgagaatccatgaagcctgtgaagagcctgccacccac
aacgcgctcgccaaaatctacatcgacagcaacaacaacccggagcggttcctgcgcgag
aacactttttacgacagcagcgtggtcgggaaatactgtgaaaagagggacccgcacctc
gcctgtgtagcctacgaaaggggggagtgtgatttggaactcatcaaggtttgcaatgag
aactctctgttcaagagtgaggctcgctaccttgtgcgcaggaaggacccagaactctgg
gcaaatgttcttgaagagaacaacccattccgtcgtcagctgattgaccaggttgtgcag
acagccctgtcggagacacaggacccagaggaggtgtctgtctctgtgaaagctttcatg
acagctgaccttcccaatgagctgattgagctgctggagaagattgtcctggataactct
gtcttcagtgagcacagaaacctacagaacctgctgatcctgactgccattaaagctgac
cgcacccgggttatggagtatataaaccgcctggataactacgatgctcctgatattgca
aacatcgccatcagcaacgagctgttcgaggaggcctttgccatcttcagaaagtttgac
gtgaacacttccgctatccaggtgttgatagaacacattgggaatttggaccgtgcctat
gagtttgcagagcgctgtaatgagccggcagtgtggagccagctggccagggcacagctg
cagaaagacctggtcaaggaagccattgactcttacatcaaggctgatgatccttctgca
tacatggaagtagtccaagcagctggcaaaaacagcaactgggaggacctggttaaattc
ctgcagatggcccgaaagaaagctagagagtcgtacgtggaaacggaactgatctttgct
ttagcgaaaaccaaccgtctctcagaactagaggaatttgtgagcgggccaaacaatgct
cacatccagcaagttggcgatcgctgttacgatgacgggatgtacgacgcagccaagttg
ctttacaacaatgtctctaactttgcccgcctggcctccacactggtacacctgggagaa
taccaggctgcagtggacagcgcccgcaaggccagcagcaccaggacctggaaggaggtt
tgctttgcctgcgtggatgggtcggagttccgcttggcacagatctgcggcttgcacatt
gtcatccacgctgatgagctggaggaattgataagttactatcaggaccgtggctacttt
gaggagctgattgctctgctggaggcagcgctgggtctggagcgggcgcacatgggaatg
ttcacagagctggccatcctgtactccaaattcaagcctcagaagatgagggagcacctg
gaactcttctggtccagagtcaatatcccgaaggtcctccgtgctgcagaacaggcacac
ctgtgggcagagctcgtcttcctctatgataaatatgaagagtatgataatgcaataata
accatgatgaatcacccctctgatgcttggaaggaagggcagttcaaagacatcattgct
aaggtggcgaatgtggagctgtattacaaagccctgcagttctatttggattacaaaccc
ctgctgatcaatgaccttctggtggtgctgtctcctcgacttgaccacaccagggcagtt
agtttctttgcaaagatgaaccagttgcagcttgttaagccttacctacgctcggtacag
aatcacaacaacaaaggtgtgaacgagtctttaaataacctgcttactgaagaggaagat
taccagggcctgagagcatccatcgacgcttatgataactttgacaatatcagcctcgcc
cagagactagagaagcatgaactgattgaattccgacgcatcgctgctttcctgtacaag
ggtaacaaccgctggaaacagagtgtggagctttgcaagaaagatcgtctctacaaggat
gccatgcagtatgctgccgagtccaaggacacggagctggcggagaatctgctgcagtgg
ttcctggaggaaggtaaacgggaatgcttcgcttcctgtctcttcacatcctacgatctg
ctgcaccctgatgtggtcctggagctggcttggaggcatgacatcatggactttgcaatg
ccttacttcatccaagtaatgagggaataccttaccaaagtggataaactagaggagact
gagagcctgcgaaagacagaggaggaagttgcagaaccaactccaatagtgtttggtcag
cagctgatgttgactgccggttccagtccggtccctcctcctgcaggatatccagcatat
ggatacgctgctcctggctttgcctcccagtccgcctatggatacaatatgtaa
DBGET
integrated database retrieval system
