Polyodon spathula (Mississippi paddlefish): 121297151
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Entry
121297151 CDS
T07273
Name
(RefSeq) TBC1 domain family member 9B-like isoform X1
KO
K19951
TBC1 domain family member 8/9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121297151
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121297151
Endosome - Golgi transport
Rab GTPases and associated proteins
121297151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GRAM
RabGAP-TBC
RabGap-TBC_2
EF-hand_1
Ric8
EF-hand_7
EF-hand_6
Motif
Other DBs
NCBI-GeneID:
121297151
NCBI-ProteinID:
XP_041079164
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All DBs
Position
22:9096677..9118559
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AA seq
1225 aa
AA seq
DB search
MWIIPEEVLLANALWVSERANPFFILQRRKGHGKGGGITGLLVGTLDVVLDSSARVAPYR
ILHQTQDSQIYWSIACGSSRKEITEHWDWLEANLLQTLSIFDNEEDITTFVKGKIQGIIA
EENKNKEVPEDEDCGKFREAELKMRKLFGMPDEEKLVNYYSCSYWKGRVPRQGWVYLSVN
HLCFYSFLLGKEVTLVIQWTDVTQLEKNATLLFPESIRVSTRDTEDFFSMFLNINETFKL
MEQLANIAMRQLLDNEAFSADRSLPKPRKAHKNISTLKRDLDARAKNESYRATFRLPQSE
KLDGHTDCTLWTPFNKMHIVGQMFVSNNYICFSSKGEDLCHLIIPLREVSVVEKADSSSV
LPSPLSISTKNKMTFLFANLKDRDFLVQRISDFLQRTPDKQQHNSKEQQDPSSPVFTASS
SPCSSLERQPAQYYSPDLATANQGLLSIFKRDAPEELGPKAAKEKMKEESWNIHFFEFGR
GVCMYRTSRTRDLVLNGIPESLRGELWLLFSGGLNDMAMNPGYYADLVEQSMGRCTLATE
EIERDLHRSMPEHRAFQNEMGIAALRRVLTAYAYRNPGIGYCQAMNIVTSVLLLYCTEEE
AFWLLVALCERMLPDYYNTRVVGALVDQGVFEELTRACLPLLYERMQELGVISTISLSWF
LTLFLSVMPFESAVLVVDCFFYEGIKLIFQVSLAVLHANMDQLLGCSDEGEAMTILGRYL
DNVVNKQTVSPPIPHLHALLTSGDEPPPEIDVFELIKTSYEKFGSLRSDVIEQMRFKQRL
KVIQSLEDTAKRSVVRSIMTDSAFTIEELEELYVLFKAQHIMTCYWGSSSSASEHHDPSL
PYLEQYRIDLGQFSQLFGALTPWGCGVHTPVLAARLFRLLDHNKDSLINFKEFVTGLSGM
YHGDLTEKLKMLYKLHLPPALCPEEAESALEATQYFTDDPSPQETPFISDLDFLLQEGSS
ATNPLAAEARDGTRNDNIQKKEEKVQDYRYYLRMWAKEKEQKKETIKDLPKMNQEQFIEL
CKTLYNMFSQDPSEQELYHSIATVASLLLRIGEVGKKFTNHTPKKPENNDRTQPASLELP
TLEKELSTSMQEESKGGNSDKVQAPEVPVELSESPQPPTSDEEAKDETSVSSFSIVSASS
LQCEDIAEDTVLIGCGEQQTCSTLDADWSISFEQILASILTETPLVDFFEKRKDIRIKIA
DCKSQRTIERQVSSSSDCELSLLSG
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtggatcattccagaggaggttttactggcgaacgcgctctgggttagcgagagggcg
aaccccttctttattctccagcgaagaaaaggacatggaaaaggagggggtatcaccggc
ctgctggtgggcaccctggatgtggtgctggactccagtgcgagagttgccccctacagg
attcttcatcaaacgcaggattcgcagatctactggagcattgcctgtggttcctctcga
aaggagatcacagagcactgggattggctggaagcaaacctgctgcagactctgtccatc
ttcgacaatgaggaggacatcaccaccttcgtcaagggcaagatccagggcattattgcc
gaggagaacaagaataaggaggttcccgaggacgaggattgtggtaagttccgtgaggcg
gagctgaagatgcggaagctgtttggaatgccggacgaggagaaactggtgaattactac
tcctgcagctactggaaggggcgggtccctcgccagggctgggtctacctgagtgtcaat
cacctctgcttctactccttcctgctgggaaaggaagtgacgctggtcatccagtggaca
gacgtgactcagcttgagaagaacgccacactgctgttcccagagagcatccgagtgagc
acgcgggacaccgaggacttcttctccatgttcctcaacatcaacgagaccttcaagctg
atggagcagctcgccaacatcgccatgcggcagctacttgacaacgaggccttttccgct
gaccgctctctgcccaagccgcgcaaggcacacaaaaacatctcaacactaaagagggac
ctggatgccagagcgaagaacgagagttaccgggccaccttcaggctgccccagagcgag
aagctggacggacacactgactgcaccctttggactcccttcaacaagatgcacatcgtg
ggacagatgttcgtctccaacaactacatctgtttctctagcaagggggaagacctgtgt
cacctcatcatcccactccgagaggtgtcagtagtggagaaggctgacagctctagtgtc
ctgcccagccctctgtccatcagcacaaagaacaagatgaccttcctgtttgccaatctg
aaggaccgggacttcctggtccagagaatctctgacttcctgcagcgcaccccagacaag
caacagcataatagtaaagaacagcaggacccctccagccccgtattcacagcctctagc
agcccctgctcttccctggagagacagcctgcccagtactacagccctgacctggccacc
gctaaccagggcctgctgagcatcttcaagagggacgcccccgaggagcttgggcccaag
gcggcgaaggagaagatgaaggaggagtcgtggaatattcacttctttgagtttggccga
ggtgtgtgcatgtatcgcacatccaggacccgggacctagtgctaaatggcattccagag
agcttgcgtggggagctgtggcttctcttctcaggtggcctgaacgacatggcgatgaac
cctgggtattatgcagatctggtggagcagtcgatgggccggtgcactctggccacggag
gagattgagagggacctgcaccgctccatgcctgagcaccgcgccttccagaacgagatg
ggcattgctgctctgcgccgcgtcctcaccgcctacgcctatcgcaacccaggcatcggc
tactgccaggctatgaacattgtcacttcggttctgctgctgtactgcactgaggaggag
gccttctggctgctggtggctctgtgtgagaggatgctgccggattactacaacacccgg
gtggtgggtgccctggtggatcagggggtgttcgaggagctgacgcgggcgtgcctgccc
ctgctctatgagcgcatgcaggagctgggggtcatctccaccatctcgctgtcctggttc
ctcaccctcttcctcagcgtcatgcccttcgagagtgcagtgctggtggtcgactgcttc
ttctacgagggcatcaagctcatcttccaggtgtccctggctgtgctgcacgccaacatg
gatcagctgctgggctgcagcgacgagggagaggccatgaccatcctgggcaggtacctg
gacaatgttgttaacaagcagaccgtgtcgccacccatccctcacctccatgcattactg
accagtggagatgaaccccctcctgaaatagatgtctttgaactcataaagacatcctac
gagaagtttggcagcctgcgttcagacgtgattgagcagatgaggtttaaacagagactg
aaagtgatccagtcactggaggacacagccaagaggagtgtggtgcgctccatcatgact
gactctgccttcaccattgaggagctggaggagctctatgtgcttttcaaggcgcagcac
ataatgacttgctactggggatcgagctccagtgcctcggagcaccatgaccccagcctg
ccctacctggagcagtatcgcatcgacctgggtcagttcagccagctgttcggagcactg
accccctggggctgtggggtgcacacccccgtcctcgctgcgcgcctcttccgcctgctc
gatcacaacaaggacagcctcatcaacttcaaggagttcgtcaccggcctcagtgggatg
taccacggagatctgactgagaaattaaagatgctttacaaacttcacctgcctccagct
ctgtgtccagaggaagcggagtcagcactggaagccactcagtacttcacagatgacccc
agtccacaagagactcctttcatctctgacctggacttcctgcttcaggaagggagctca
gcaacaaatccgctggctgcagaagctagagacggaacaaggaatgataacatacagaag
aaagaggagaaggtccaggattaccggtattaccttcgcatgtgggccaaagagaaggag
caaaaaaaagagaccatcaaagacctgcccaaaatgaaccaggagcagttcattgagctc
tgtaaaaccctgtacaacatgtttagccaagacccttctgagcaggagctatatcactcc
atcgcaacagtggcaagccttcttctgagaatcggagaggttggcaagaagttcacaaac
cacaccccaaagaagccagagaacaacgacagaacacagcctgcttctcttgaactgcct
actctagagaaggagctctctactagtatgcaagaggaaagcaagggagggaattcagac
aaggtccaggctcccgaggtcccagtagagctctcagagagccctcagcctcccacatcg
gatgaggaagccaaagacgagacttcagtttcttctttctcaatcgtgagtgctagctcc
ctgcagtgtgaggacatcgctgaggacacggtcctgattggctgtggagagcagcaaacg
tgcagcaccctggatgctgattggtccatctccttcgagcagatcctggcctccattcta
actgagacacccctggtcgacttctttgagaaacggaaagacatccgtatcaagatagca
gactgcaagagccaaaggaccattgagaggcaggtcagctcctccagcgactgcgagctc
tcgctgctttcggggtga
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