KEGG   Polyodon spathula (Mississippi paddlefish): 121297218
Entry
121297218         CDS       T07273                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013  Nucleocytoplasmic transport
pspa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121297218
  09122 Translation
   03013 Nucleocytoplasmic transport
    121297218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121297218
   03041 Spliceosome [BR:pspa03041]
    121297218
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     121297218
Spliceosome [BR:pspa03041]
 Complex C
  Other components
   EJC/TREX
    121297218
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121297218
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_Aladin WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_EML eIF2A Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 RMC1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_HPS5 NBCH_WD40 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_ACSF4 B-prop_COPA_B_2nd Beta-prop_SPT8 PD40 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_WDR11_1st Cytochrom_D1 DPPIV_N Beta-prop_ELP1_1st WD_LRWD1 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 121297218
NCBI-ProteinID: XP_041079299
LinkDB
Position
22:complement(3401889..3409008)
AA seq 334 aa
MDCDLFPPDSSNMASQYYQEMQDSFRNNNKSREFAAHSAKVHSVAWSCDGRRLASGSFDK
TASVFVLEKDRLVKENNYRGHGDSVDQLCWHPTNPDIFVTASGDKTIRIWDVRTTKCIAT
VNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKSHRSRAEEQFKFEVNEISWNNDNDMF
YLTNGNGCINILSYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELV
CVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHP
KKPLLAYACDDKDGKYDSNREAGTVKLFGLPNDS
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggattgtgatctctttccgcccgactccagcaacatggcttcccagtactaccaggag
atgcaggacagctttagaaacaacaataagagccgggaattcgcggctcactccgccaag
gtgcactccgtcgcttggagctgcgacggcaggagattggcttcgggctcctttgataag
actgccagtgtgttcgtgctagagaaagaccggctggtgaaggagaacaactatagaggc
cacggggacagcgtggatcagctctgctggcatccaactaatccagacatcttcgtcaca
gcctcgggagacaaaactatccgcatctgggacgtgcggactacaaaatgcattgcgaca
gtcaacaccaaaggggagaacatcaatatctgctggagcccggacggacagaccatcgct
gttgggaacaaagatgacgtggtgaccttcattgatgccaagagccaccggtcccgtgca
gaggagcagttcaaattcgaggtgaacgagatctcctggaacaacgacaatgacatgttc
tacctgaccaatggcaacggctgcatcaacatcctcagctaccctgaactgaagcccatt
cagtccattaatgcccatccttccaactgtatctgtatcaagtttgacccaactgggaag
tactttgctacaggcagtgcggacgccctggtcagcctgtggaatgtggaagagctggtc
tgtgttcgctgcttctccaggctggactggccagtaaggaccctgagcttcagtcatgat
gggaagatgctggcctcggcatcagaggaccacttcatagacattgcggaagtggaaaca
ggtgagaagctatgggaagtgcagtgcgagtccccaactttcacagtggcctggcatccc
aagaaacctctgcttgcatatgcctgtgatgacaaggacgggaaatacgacagcaaccgc
gaggcaggcaccgtcaagctctttggcctgcccaatgactcgtag

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