Polyodon spathula (Mississippi paddlefish): 121297268
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Entry
121297268 CDS
T07273
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121297268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121297268
03012 Translation factors [BR:
pspa03012
]
121297268
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121297268
Translation factors [BR:
pspa03012
]
Eukaryotic type
Release factors
121297268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_1
eRF1_2
eRF1_3
acVLRF1
baeRF_family10
Ribosomal_L7Ae
Motif
Other DBs
NCBI-GeneID:
121297268
NCBI-ProteinID:
XP_041079409
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Position
22:complement(7882529..7893140)
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AA seq
437 aa
AA seq
DB search
MADDPTAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFVSNDKVNVAGMVLAGSADFKTELSQSD
MFDPRLQAKVLKLVDISYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCSGLEEDKVLFLTPEQEKDKSHFTDK
ETGQEHELIDSMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ
LIEYQGEDDEFFDLDDY
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatccgacagcagccgacagaaacgtggaaatttggaaaatcaagaaactg
atcaaaagcttggaagcggcccgaggaaatggcaccagcatgatctccttaatcatcccc
cctaaggaccagatctcacgggtggcaaagatgttggcagatgagtttggcactgcatcc
aacatcaaatccagagtcaacagactgtctgtattgggagccatcacatctgtacagcag
agactcaaactttacaacaaagtgccaccaaacgggcttgttgtctattgtggaacaatc
gtaacggaggagggcaaggagaagaaagttaacatagactttgagccgttcaaacccatc
aacacgtcgctttatctgtgtgacaacaaattccatacggaggctctgacagcgctgcta
tcagatgacagtaaattcggcttcatcgtgattgacgggagcggggcgctgttcggtaca
ctccaggggaacacgcgggaggtcctgcacaaattcacagtcgacttgcccaagaagcac
ggcaggggtggtcaatctgctctgcggttcgccaggttacgaatggagaagagacacaac
tacgtgcgaaaggtggcggagacggcagtgcagcttttcgtctccaacgataaagtcaac
gtggctgggatggtgctggccgggtctgcggacttcaagactgagctgagtcagtctgat
atgtttgacccaagattacaagccaaagtgctgaagctggtggacatctcgtacggagga
gagaacggtttcaaccaggccatagagctgtctgcagaggtgctctccaatgtgaagttc
attcaagaaaagaagctaatagggcggtactttgatgagatcagccaggacacagggaag
tactgctttggagtggaagatacactgaaggctctggagatgggggctgtggagatcctc
attgtgtatgagaacttggacatcatgcgatatgtcttgcgctgcagtggtttagaagag
gacaaggtgctcttcctcacaccagagcaggagaaggataagtcacactttacagacaag
gagaccgggcaagagcatgagctgatcgacagcatgccacttctggagtggtttgccaac
aactacaagaagtttggagccacactggaaattgtgacggacaagtcgcaggagggctcc
cagttcgtcaaagggtttggtgggattggaggaatcctgcgatatcgagttgatttccag
ctaatagagtaccagggagaagatgatgaatttttcgatttggatgactactag
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