Polyodon spathula (Mississippi paddlefish): 121297279
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Entry
121297279 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase DTX1-like
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121297279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121297279
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121297279
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121297279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
WWE
zf-RING_UBOX
zf-C3HC4
WWE_5
zf-rbx1
zf-RING_11
zf-RING_2
zf-RING_5
zf-RING_Vps41
PHD_NSD
zf-UDP
zf-ANAPC11
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
121297279
NCBI-ProteinID:
XP_041079447
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All DBs
Position
22:22888540..22945605
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AA seq
622 aa
AA seq
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MMLRPGSAMMIHMNGLGYAPQNLARVVVWEWLNEHGRWRPYSAAVCHHIENVLKGDSRGT
VVLGQVDPQLAPYIIDLQSMHQFRQDTGTMRPAQRNFYEPSSAPGKGVVWEWENDSGSWT
PYDMEICVTIQNAYEKQHPWLDLTSLGFCYLIDFNSMTQTNRQSQRKRRLRRRMDLAYPL
TTGSIPKSQSWPVGSSSGQPCSCQQCILVNSTRAASNAILASQRRKVYTGANGTPGTLTL
VRQSNTFAGTTLWSPTSSVSSGSAKPEQVQSPGTGTTYPRVPALPAPTHVPGQNNLNRPG
PQRSALVSTRGSIPLGVPALPVKNLTGSGPVHPALAGMTGILMCAAGLPVCLTRAPKPIL
YPPPINKSDIKPVPGVNGTCRKTKKKHLKKGKNPEDVVKRYMEKVKVVPDEDCTICMERL
TTSSGYEGVLSHKGIKSDLVGKLSKCGHIYHLLCLVAMYNNGNKDGSLQCPTCKAIYGEK
TGTQPPGKMEFHVIPHCLPGYPEFKTIRIIYDIPAGIQGTEHPNPGKKFSARGFPRHCYL
PDVEKGRKVLKLLIVAWDRRLIFTIGTSNTTGETDTVVWNEIHHKTEFGSNLTGHGYPDP
KYLGNVLAELSAQGVTDEVLKD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgcgtcctggatctgcaatgatgatccacatgaacggactggggtatgcaccc
cagaacctggcccgggtggtggtgtgggagtggctgaacgagcacggtcggtggcggccc
tacagcgctgccgtgtgccaccacatcgagaacgtgttgaagggggactcgcggggcaca
gtggtgctgggccaggtggacccacaactggccccttacatcatagacctgcaatcaatg
caccagtttcgacaggacacaggcaccatgcggcctgcgcagcgtaacttctatgagccc
tcctcggccccggggaagggggtggtgtgggagtgggagaacgacagcggctcctggacc
ccctacgacatggagatctgcgtgactatccagaacgcctatgagaagcagcacccgtgg
ctggacctcacatcgctgggcttctgctacctcattgacttcaacagcatgacccagacc
aaccggcagagccagcgcaagaggaggctgcgccgcaggatggacctagcctacccgctc
accacgggctccatccccaagtcccagtcctggcctgtcggcagcagctctggtcagccc
tgctcctgccagcagtgcatcctggtcaacagcacccgggccgcctccaacgccatcctg
gcctcccagcgccgcaaagtctacaccggtgccaacgggacccccgggaccctcactctg
gttaggcagagcaacacctttgccggcaccaccctctggtcccccacctcttcggtcagc
agtggctcggccaagccagagcaggtccagtccccaggtacgggaaccacctaccccagg
gttcctgctctccctgcccccacccacgtccctgggcagaacaacctgaaccggccgggc
cctcagcgctctgccttggtgagcacgcgaggatccatcccactaggggtccctgcactt
cctgtgaagaacctcactggctctggcccagttcaccctgcactggctggtatgactggg
atcctgatgtgtgcggcgggcctccctgtgtgtctgaccagggcccccaaacccatcctg
taccccccgcccatcaacaagagcgacattaagcccgtcccaggggtgaacggcacctgc
cgcaaaaccaagaagaagcacctgaagaaagggaagaacccagaggatgtggtgaagagg
tacatggaaaaagtaaaggtggttcctgacgaggactgcactatctgtatggagagactg
accacctcgtccggctatgagggggtgctcagtcacaaagggatcaagtcagacctggtg
ggcaagctgagcaagtgtggccacatctatcacctgctgtgcctggtagccatgtacaac
aacggcaacaaggacggcagtctgcagtgccccacctgcaaagctatctatggtgaaaag
acaggcacacagcctcctgggaagatggagttccacgtcatcccccactgccttcccgga
taccccgaattcaaaaccatccgcattatctacgatatccctgccggcatccagggcacc
gagcacccaaatccagggaagaagtttagtgccagaggattcccccggcactgctacctg
ccggacgtagaaaagggaagaaaggtcctaaagctgttgatagttgcctgggaccgccgc
ttgatctttaccatcggcacgtccaacaccactggggagacggacacagtggtctggaac
gagatccaccacaagacagaatttggctccaacttgacaggacatggctacccagacccc
aaatacctgggcaatgtcctggcggaactctccgctcagggagtgaccgacgaggtgctg
aaagactga
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