KEGG   Polyodon spathula (Mississippi paddlefish): 121297308
Entry
121297308         CDS       T07273                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082  ATP-dependent chromatin remodeling
pspa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121297308
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121297308
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pspa01009]
    121297308
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pspa03021]
    121297308
   03036 Chromosome and associated proteins [BR:pspa03036]
    121297308
Protein phosphatases and associated proteins [BR:pspa01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     121297308
Transcription machinery [BR:pspa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     121297308
    SWI/SNF complex
     121297308
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    121297308
   PBAF complex
    121297308
   SWI/SNF complex
    121297308
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 121297308
NCBI-ProteinID: XP_041079485
LinkDB
Position
22:24390499..24400679
AA seq 373 aa
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPGVIHENASQSEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLSFVPAIASAIRQQIESYPTDS
ILEEQADQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggcgttgagtaaaacgtttggccagaaaccggtaaaatttcaactagaagaagatggg
gatttctatatgatcgggtcagaggtagggaactacctgcgtatgttcaggggttctctg
tataagaggtacccctctctctggaggagactagcttcagttgaagagagaaagaagata
gttgcatcctcacatgatcatggttacacgactttggcgaccagcgtgactctcctgaaa
gcttcggaagttgaggagattctggagggaaacgatgagaagtacaaagcagtttccatc
agcacggagccacctgcctacctcagagaacagaaggcaaagcggaatagccagtgggtg
cccaccctgcccaacagctcccaccacctggacgcagtgccctgctccactaccatcaac
cggaatcgcatgggccgtgacaagaagaggactttcccactctgttttgatgatcatgac
ccaggggttattcacgagaatgcttcccagtccgaagttctggttccgattcgacttgat
atggagatagatggacagaagctgagggacgccttcacttggaacatgaatgagaagctg
atgactcctgaaatgtttgcagagattctgtgtgacgacctggatttgaaccccctatcc
ttcgtccctgccattgcttcagcgatcaggcagcagatcgagtcgtaccccacagacagc
atcctggaggagcaggcagaccagcgggtcatcatcaagctgaatatccatgttggcaac
atctcgctggtggaccagttcgaatgggacatgtcggagaaggagaactctccagagaag
tttgccctgaagctgtgctccgagctgggcctggggggagagtttgtcaccactatcgcc
tacagcatccgggggcagctcagctggcaccagaggacctacgccttcagtgagaacccg
ttgccgacggtggagatcgcgattcgaaacacaggggacgcagaccagtggtgccccctg
ctggagaccctgacagacgctgagatggagaagaagatcagagaccaggacagaaacaca
aggcgtatgagacgtctcgccaacactgcaccagcctggtaa

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