Polyodon spathula (Mississippi paddlefish): 121297348
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Entry
121297348 CDS
T07273
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121297348 (ddx55)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121297348 (ddx55)
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121297348 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
121297348
NCBI-ProteinID:
XP_041079560
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Position
22:complement(25899782..25905390)
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AA seq
601 aa
AA seq
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MENVTEGTWRSLPVKLNEKIFQTLDELGFTHMTPVQSACIPLFMKNKDVAAEAVTGSGKT
LAFVIPILEILLRREVKLKKMQVGALVVTPTRELAIQINEVMEHFTKHFPQFRRILLIGG
SNPIEDVEKFKELGGNIVIATPGRLEDMFRRKADGLDLACSVKTLDVLVLDEADRLLDMG
FEASLNTILGYLPKQRRTGLFSATQTQEVENLVRAGLRNPVRITVKEKGAAESSTQKTPA
RLQNYYTVCRTDEKFNLLVAFLRQHKHEKHLVFFSTCACVEYYGKALEVLIKNGTILCIH
GKMKHKRNKIFTEFRKLKSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTA
RIGNQGSALVFLLPMEESYVNFLAINQKCPMQEMAPIKDMVDVLPKLKSLAMADRAMYER
GMRAFVSCVQAYNKHECSLIFRVKDLDFAGMARGFALLRLPKMPELKGKSFPGFVPELID
TDSIPYKDKNREKQRQKMLAEMQQQRPQDRVRKNFTKNKAWSKQKTRKDRKKKKADKRKR
EEGSDIDDEDMGELLKDTRLLKKLKKGKITEEDFEKQVITGPKSTNKKGGDHEQDDSEDE
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgtgacggagggcacgtggagaagtttacctgttaaactcaacgaaaagatt
tttcaaactctcgacgagctgggatttacacacatgaccccagtccagtctgcgtgcatc
cctctgtttatgaagaataaagacgtggcggctgaagcggtgacaggcagtggcaagacc
ttggcgtttgttattcccatattggaaatcctgctaaggcgagaggtgaagttgaagaaa
atgcaggttggtgctctcgtcgttacaccaacacgagagcttgccattcagatcaatgaa
gtgatggaacattttactaagcatttcccacagttcagacggatacttctaatcggtggg
agtaatccaattgaagatgtggaaaaattcaaagaacttggtggaaacatcgtcattgcc
acgccagggcgtctggaggacatgttcaggaggaaggcggatgggctggacctggcttgc
agtgtgaagacactcgatgtcctggttttagacgaggcggaccgacttcttgacatggga
tttgaagcaagcttgaataccattctcgggtatttacccaagcagaggaggactggcctg
ttctcagcaacgcagacccaggaggtggagaacctggtgagagccggactgcgtaaccca
gtgcgcatcacagtgaaggagaaaggagccgcggagagcagcacacagaaaacaccagcc
agactgcagaactactacacggtctgcagaacagatgagaagtttaacctgctggtggca
tttcttcgacagcacaaacacgagaaacatctggttttcttcagtacgtgcgcttgtgtg
gagtattacgggaaagccttagaagtcttaattaaaaatggaacgattctttgcattcac
gggaagatgaaacataagcgcaacaaaatctttacagagtttcggaagttaaaaagtggc
attctggtttgcactgatgtaatggcacgaggtatcgacattcctgaggttaactgggtt
ttgcagtatgaccctccaagcaatgccagtgcttttgtccatcgctgcggacggaccgct
cgcattggcaatcagggcagtgctcttgtatttttgcttcctatggaagaatcttatgtc
aacttcctggccattaaccagaagtgtccaatgcaggagatggcccccataaaggacatg
gtagatgtccttcccaaattgaagtctctagccatggcagacagagctatgtatgagagg
ggaatgagagcctttgtgtcgtgcgtacaagcatataacaaacacgaatgcagcctcatc
ttcagagtaaaggatctggactttgcgggcatggctcgtggctttgcattgttaagattg
ccaaagatgcctgagctaaaaggaaagagtttcccaggttttgtacccgaactgatagac
acagactccatcccctacaaagataagaacagggagaagcaacggcagaagatgctggca
gaaatgcaacagcagagaccgcaggacagagtcaggaagaattttaccaagaacaaggca
tggtccaaacagaaaacaagaaaggacaggaagaaaaagaaagcagacaaaagaaagaga
gaggagggctcggacattgacgacgaggatatgggtgaactgctcaaagacactcggttg
ttgaagaagctgaaaaagggcaaaatcacagaggaggattttgagaagcaagtgataaca
ggaccgaagtcaaccaacaaaaagggaggcgaccacgagcaggatgattcagaggatgaa
gaatag
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