Polyodon spathula (Mississippi paddlefish): 121297399
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Entry
121297399 CDS
T07273
Symbol
ufd1l
Name
(RefSeq) ubiquitin recognition factor in ER-associated degradation protein 1
KO
K14016
ubiquitin fusion degradation protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121297399 (ufd1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121297399 (ufd1l)
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121297399 (ufd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1_N1
UFD1_N2
CDC48_2
Motif
Other DBs
NCBI-GeneID:
121297399
NCBI-ProteinID:
XP_041079646
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All DBs
Position
22:28683596..28688132
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AA seq
309 aa
AA seq
DB search
MFSFNMFDHPIPRAFQNRFSTQYRCYSVSMLAGPNDRSDVDKGGKIIMPPSALDQLSRLN
ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLMVA
TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVVAINYNEKVYELRVMETKPDKAV
SIIECDMNVDFDAPLGYKEPERRPQQREEPTEEEADQSSYGEMDLGFRAFACSGNRLDGK
TKGIEPSPVPIDPSDIKRGIPNYEYKVGRITFIRNSRPQPKKVDDDDALSRFIAFSGEGQ
SLRKKGRNP
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctttaatatgtttgaccacccgattccccgggctttccagaatcgcttctcc
acgcagtaccgctgctactccgtgtctatgcttgcgggacccaatgaccgctcggatgtg
gacaaaggaggaaagattataatgcccccatctgcactggaccagcttagtcgacttaat
atcacatatccaatgctgtttaagctgacaaataaaaattcagatcgcatgacacattgt
ggtgtgctggagtttgttgcagatgagggcatctgttatcttccacactggatgatgcag
aacttgttgttggaagaggggggtctggtgcaggtggagagtgtcaatctcatggtcgct
acgtactccaaattccagccacagagtcctgatttcctggatataaccaatcccaaagca
gtgttagaaaatgctttgagaaattttgcatgcttaactactggggatgtggttgcaatc
aactacaatgaaaaggtctatgaactacgagtgatggaaacaaaaccagacaaggctgtg
tctatcattgaatgtgacatgaatgtggatttcgatgccccattggggtacaaagagcca
gagagaagaccacaacagcgcgaggagcccacagaagaggaggctgatcagagcagctac
ggtgagatggatttaggattcagagcattcgcttgctcaggaaaccgacttgatgggaag
acgaaaggaattgagcccagcccagtgcccattgacccaagcgacattaagagagggatc
cctaactatgagtacaaagtcggaaggatcacattcatcagaaattcacgaccacagcca
aagaaagtggatgatgatgatgctctgagcaggttcatcgccttttcaggggaaggacaa
tcactgcgcaagaaaggaaggaacccttaa
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