Polyodon spathula (Mississippi paddlefish): 121297413
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Entry
121297413 CDS
T07273
Name
(RefSeq) sodium-dependent serotonin transporter-like
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121297413
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121297413
Transporters [BR:
pspa02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121297413
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Gene cluster
GFIT
Motif
Pfam:
SNF
NADH_dh_m_C1
Motif
Other DBs
NCBI-GeneID:
121297413
NCBI-ProteinID:
XP_041079663
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Position
22:complement(27032917..27047513)
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AA seq
590 aa
AA seq
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MSHQDSSAPTGSLVSQGTTNAGYSSNTVPMIAQRDSRDSWSKKMDFLLSVIGFAVDLGNV
WRFPYICYQNGGGAFLIPYTLMAIFGGVPLFYMELALGQFHRTGAISIWKHICPIFKGIG
FAICIISLYVSFYYNTIIAWALYYFYSSFTSTLPWTSCDNVWNTPNCTNYFGTNNISWNN
YSHSPAEEFYTRNVLEIHKSSGLRGVGGLRWQLVLCLFLIFTIVYFSLWKGVKTSGKVVW
VTATLPYVVLFILLIRGATLPGAWRGVVFYLKPKWEKLLETRVWVDAAAQIFFSLGPGFG
VLLALASYNPFTNNCYRDAIVTSLVNCMTSFLSGFVIFTVLGYMAEMRNVEVEDVAKDKG
PSLLFITYPEAIANMVGSTFFAIIFFMMVIALGLDSTFGGLEAIITAVMDEYPQHLFKRR
ELFVLGLVIVCFMGSLSTLTHGGAYVVQLLETFGAGCSIIAVVFLEAIAVSWFYGIQRFS
NDVKAMLGFAPGIFWKVCWVAISPAFLAYIIVSSLLDRHPLILFDYKYPDWSTTVGFIVG
TSSFIWIPVYMVYKLVWTPGSLKQRLAVCMCPERTMRDPHTDSLSMTPVP
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaccaagactcctcggctcccaccggtagcctggtcagccagggcaccactaac
gctggttacagctccaacacggtgccgatgatcgcccaaagagattccagggatagctgg
agcaaaaagatggattttctcttgtctgtaattggttttgcggtggatctaggcaacgtg
tggaggttcccttatatctgttatcaaaacggaggtggtgctttcctcatcccctacacc
ctgatggctatctttgggggggtccccctcttctacatggagcttgcattggggcaattt
cacaggactggagccatctccatctggaaacacatctgccccatttttaaagggatcgga
ttcgctatctgcatcatctctttgtacgtgtccttctattacaacaccatcatcgcctgg
gcactgtactatttctactcatccttcactagcacgctgccctggaccagctgcgacaac
gtctggaacacgcccaactgcaccaactacttcggcaccaacaacatctcctggaacaac
tactcccactccccagccgaggagttttatacgaggaatgtgctggagatccacaagtca
tcagggctgcgcggagtgggggggctgcgctggcagctcgtgctctgcctcttcctcatc
ttcaccatcgtctacttcagcctgtggaagggagtcaagacatcagggaaggtggtgtgg
gtgacagcaaccctgccctacgtggtgctcttcattctgctgattcgtggagccaccctg
cctggcgcttggaggggcgtcgtcttctacctcaaacccaaatgggagaagctgcttgag
accagggtatgggtggatgcagcagcccagattttcttctctttgggtcccgggttcgga
gtgctccttgccttggcgagctataaccctttcaccaacaactgctaccgagatgccatc
gtgaccagtctggtaaactgcatgaccagtttcctctcaggctttgtgatcttcacggtg
ttggggtacatggcagaaatgaggaacgtggaagttgaggacgtggcaaaagacaaaggt
cccagtctcctgttcatcacctaccctgaggccattgctaacatggtgggctccacgttc
tttgccatcatattcttcatgatggtgatcgccctgggactagacagcacgttcgggggt
ctggaggctattatcactgctgtgatggatgagtatcctcagcacctgttcaagcggcgg
gagctgttcgtgctggggctggtgatcgtgtgcttcatgggctcgctcagcacccttacc
catgggggtgcctatgtggtccagctgctcgagacgtttggagcgggctgttcaatcatt
gcagtggttttcttggaagccatcgctgtgtcgtggttctacggtatccagcgattcagt
aatgatgtcaaagccatgctgggctttgctccgggaatcttctggaaagtgtgctgggtg
gctatcagccctgccttcttagcatatataatagtgagctccctactggatcggcacccc
ctcatactgtttgactacaagtaccctgactggagcaccacagtggggttcatcgttggg
acttcttccttcatctggatcccggtttacatggtctacaagctggtgtggacccccggc
tcactcaagcagcgcttggcggtgtgtatgtgtcctgagaggacaatgcgagacccgcac
actgattcgctcagcatgactcccgtcccctaa
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