Polyodon spathula (Mississippi paddlefish): 121297500
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Entry
121297500 CDS
T07273
Name
(RefSeq) transcription factor SOX-30-like
KO
K09271
transcription factor SOX15/30
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121297500
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121297500
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121297500
NCBI-ProteinID:
XP_041079782
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Position
22:6638178..6641926
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AA seq
634 aa
AA seq
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MDRHRRQSLTVETFPKKKDGNQNEVKNEAIQNTPETSESCTKKSGNFIQTEHVSKKDGTP
SLGNEKQQLLESKIKKIRLADIKDETIMGTKRHGDVKIILKAESLNEISERRAVVFLSKE
KDNRAGKLDTHHGSAEENSGNSVRVFFTEQSDSTGNTDMRQEENRPGHCVTTFTVTQPQQ
KEAIHLQQSSGPSAQNRGVPIILHHVTPDTNFHIQSPIAAPEAIRLTQVPFNINLKPILE
PSVKVETKDVPLTVPPSDPGKTLGAFETTQIKDRNGHIKRPMNAFMVWARIHRPALAKAN
PAANNADISVQLGIEWNKLSEEQKKPYYDTAQKIKEKHREEFPGNSQSPVQTTNGTVQQS
APVTMYQQSSPVQMIVTTANLPARQSGPASSSVMSVKTDVHRSIPMPTSLPSHPETRFQC
APVQAMPRTFENNGISQYHYSTPSELLIPKEMQPSVASCSRGPQLPPPPLPHPHVYPPPT
MAHPANLFAPAPRFPFPPPYFIPGPHYFPSSPCLYSRPPYAYSDYPNPMSDYLGYYEDRY
QKHEAMFSALNRDYSFRDCADGGLYNNESHSSEGMNERAYHGNHAAEYLNSVPSLDVVAL
ENVFTAPVMAPARLQKVNVTDTDEEEEDRVLRNL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggacaggcaccgtagacaaagtcttaccgtagaaacgtttccgaaaaaaaaagatggg
aatcaaaatgaagttaaaaacgaggcgattcaaaacacgcccgagactagcgaaagctgc
acgaaaaaatccggtaactttatacaaacggaacatgtttccaaaaaggacggcacgccg
tcattgggcaatgaaaagcagcaactactggaatcaaaaattaagaaaatacgtcttgca
gatataaaggatgaaacaatcatgggtactaaaaggcatggtgacgtgaaaattatttta
aaagccgagagtttaaacgaaattagtgaaagaagagcagttgtctttttatcgaaagag
aaagataatagagcaggtaaactagacacccaccatggatcagctgaagaaaatagtggg
aacagcgtccgggtgttttttaccgaacagagcgacagcacgggaaataccgatatgaga
caagaggaaaatagaccggggcattgtgtgactactttcactgtaacgcagcctcagcag
aaagaggcgatacatttgcaacaatccagcggacccagcgctcagaatcgaggtgtccca
ataattcttcaccatgttacaccagacacaaacttccacattcagagtccaatagctgcc
cccgaagcaatcaggttaacacaagtgccgtttaatatcaatctaaaaccaatcctagag
ccgtctgtaaaagttgagactaaagacgtgcccctcactgtcccaccatcagatccaggt
aaaaccttaggagcatttgaaacaacccagattaaagacagaaatgggcacattaaacgt
ccaatgaatgcttttatggtctgggccagaatccatagaccagcacttgccaaggctaac
cctgctgctaacaatgcagatataagtgtgcagcttggaatagaatggaacaagctctca
gaggaacaaaagaaaccttattatgatacagctcagaagatcaaagaaaaacacagagaa
gaatttcctgggaacagtcaatctcctgttcaaaccacaaatggcactgtccagcagtca
gcccctgtaaccatgtatcagcagtccagcccagtccagatgattgttacaacagccaac
ctgccggctcgtcagtcagggccagcctcatcttcagtgatgtctgtgaagactgatgtg
caccgcagtatccccatgccaacctcactcccaagccaccctgagactaggtttcagtgt
gctccagtacaggccatgcccagaacctttgagaacaatggcatttcccagtaccactac
agcaccccctctgagctgctgatacccaaggaaatgcagcccagtgtagccagctgttca
agaggtccgcagcttcctccaccaccccttccccacccacacgtttaccccccacccacc
atggctcacccagccaatctctttgcaccggcacctcgctttccattccctcccccctat
tttataccgggaccacactacttcccatcaagcccgtgtctttacagtcgccctccatac
gcctacagtgattatccaaacccaatgtccgactacctcggttactatgaagaccgctac
cagaagcacgaggcgatgttttctgccctaaaccgggactactcgttcagagactgcgca
gatgggggcctgtacaataacgaatctcatagcagcgagggcatgaatgaacgggcttac
catggcaaccacgcagcagagtatctgaactcggtgccgtcgctggacgtggtcgccttg
gagaacgtcttcacagcgcctgtaatggctccagcacgcctgcagaaagtcaacgtgacc
gacactgacgaggaggaagaagacagagttttgagaaatttatga
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