Polyodon spathula (Mississippi paddlefish): 121297571
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Entry
121297571 CDS
T07273
Name
(RefSeq) protocadherin-12-like isoform X1
KO
K16499
protocadherin delta 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121297571
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121297571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
121297571
NCBI-ProteinID:
XP_041079877
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All DBs
Position
22:9277520..9284394
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AA seq
1208 aa
AA seq
DB search
MVKAAQLPILLLWFLHGVCCLDSVPPTIQYKVLEEVPIGTLIGKIADDLRLEGENKALED
FQIVEPVRALPFRVGLQDGILSIADRLDRDVLCWDTSPCLIPFNILYRKGGTIELLQLQV
EVLDINDHSPTFPSLEQEIEISESASLHTTIPLDRALDPDAGTNALHTYSLSPNQHFQLD
VLTRSEGTKHGQLVVINALDREVQSSCEMLLTACDKGNPPKCGTMLVRVNILDSNDNSPV
FERNLFSVELKEDTMPGTTIINLQATDPDQGANGEIEYSFSKHIPLEVLSIFNINPKTGT
VTVTGVLDYEERHTYELDIEARDLGPNPIPAHCKLHIKVLDVNDNAPKIHVMWAPPDSDV
AMVSEGAATETFLALVMVSDADSGLNGNIQCQVHHGLGHFRLRRTHGDNYMVVTNATLDR
ERQEKYNLTLVAKDQGIPSFSLTKHLTIHVMDENDNAPVFSKSIYEVSFQENNPHGLYIL
TVKAHDVDLGLSGNVTYSIKDSTNLRKPAAPFIIHPTDGMIYTQQSLDFEQTKGLTLIVE
ATDNGQPPLSSSASVLINIQDVNDNHPLIVDPALKNHRAALSIPVNTEKREIVSEVEEAA
SEHRDTLTNYLLELFPKSNDSAAKEKPDGYLVTTVKAKDADAGLNGELRYEIASRDSLFS
IDEVTGQIFVNISNVTELIGKMFVVEVTVRDLGSPPLSTRASLELTFLSLFDHLKNSSPG
QHGLLSFPLTIAICFGAFCLLVVLAATLVTTFCRNEKRENRAYNCRQAESTYTRHPRRPQ
KQIQKADIHLVPVLRGRQEEPAGGDPGRPPSAGSTLTLDALEAFPPCQFNLSPSLSRTLR
NQTFPENNSTLPLSPPKTLRKLHNIEESGTLPRTPANPHRTLKKPKNMELHQTEGPAAQL
QASLPHTGTLKLPGKAAVQHSAQEEPDSAPASPPFRTLRRQRNADSKLRTEKDDHQQILR
NLVRISMAALAEYNPIELTAASTEVQQVSQLLSLLHRGQFQPKPNFRGNKYSARAGRSGA
QDADWQSTKDSGHGESEAGDMDWETGRDSPIDPLLVEELDNLLTQTDDVFMDLPDPAWMA
RLSLPLTTDYRENVFVPDGPPSPETPALPPAADGAASFSTFGKAPGESSQISGHLISEVS
TLFEMLLTQKGDSHPRTSAEVLYRLSAAYRRSLGLEGAATGGGNVPRGSPKTQDKADPSR
DLEIHQLV
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagctgctcagctgcccatactgcttctgtggtttttgcacggtgtttgctgt
ttggattctgttccccctacaattcaatacaaggttttagaggaagtgcccattgggaca
ttgattggaaagattgctgatgatctgagactagaaggggagaataaagcattggaggat
tttcaaattgttgagccagttcgggctttgccattccgggttggactacaagatgggatt
ctttccattgctgatcgtctggatagagatgtcctttgctgggataccagcccttgtttg
attccttttaatatactgtataggaaaggagggaccattgagcttttgcagttacaggtg
gaagtcttggatataaatgatcacagtccgacttttccaagcttggagcaggaaattgag
atttcagagagtgcctcactgcacaccacaataccactggatagggcgctggatccagat
gctggcaccaatgctctgcatacttattccttatcccctaaccagcattttcaattagat
gtcctcacccggtcagaaggaaccaaacatgggcagcttgtggtcatcaatgcactggac
agggaggttcagtcttcctgtgaaatgcttctgacagcctgtgataaaggaaatccaccc
aaatgtgggaccatgctggtaagggttaacattttggattctaatgataacagtccagtt
tttgaacgcaacttgttttccgttgagctaaaggaagacacaatgccagggaccaccatc
atcaatcttcaggccaccgatcctgatcaaggggccaatggagaaattgagtattctttt
agcaagcatatccctttagaagtactgagcatcttcaatattaaccccaaaacaggaaca
gtgactgtaacaggagttttggactatgaggaaagacatacttatgagcttgacatcgaa
gccagggatttggggcctaatcccatccctgcccattgcaaactccatatcaaagtcctg
gatgttaatgataatgcacccaagatacatgtcatgtgggctccaccagattctgatgtt
gccatggtttctgagggtgctgctactgaaaccttccttgccctagtgatggtatctgat
gctgactctgggctcaatgggaacatccagtgccaagtccatcatgggctgggccatttc
cggctgaggaggacccatggagacaactatatggtagtgaccaatgccaccttggatagg
gagaggcaggagaagtacaacctcactctggtggccaaggaccaaggcatcccatccttc
tctttgacaaagcacctcaccatacatgtaatggatgaaaatgacaacgcacctgtgttc
tcaaagagtatttatgaggtttctttccaggagaacaatccccatggtctttacattctt
acggtcaaagctcacgatgttgacctgggcctcagtgggaatgtcacttactcaattaag
gattccacaaatctaagaaaaccagctgccccctttatcatccaccccacagatggtatg
atctatactcagcagtcattagattttgagcaaacaaaaggtcttacactcatagtggag
gcaacagacaatgggcaaccaccactgtctagcagtgcttctgtcttaataaatatccaa
gatgtcaatgataaccatcctttgattgtggacccagcactgaagaaccacagggcagca
cttagcatccctgtcaacacagagaagagagagatagtcagtgaggtggaagaggctgct
agtgaacacagagacacactaactaattacctcctcgagctttttccaaagagtaacgac
tctgcagcaaaagagaaaccagatggttacttagtaacaactgtcaaagccaaggatgct
gatgcaggcctaaatggagagctccgctatgagatagcaagtagggatagtttattttca
atagatgaagtgactggacagatctttgtgaatatcagcaatgttacagagctgattgga
aaaatgtttgtagtagaggtcactgttcgggacttgggttctccaccactatccactcga
gcttctttggaattgacttttctcagtctctttgaccatctcaaaaactcttctcctggc
cagcatggactactgagctttcccttgactatagccatctgctttggggccttctgtctt
ctggttgtcttggcagcaaccttggtgaccactttctgtcggaatgaaaaacgtgaaaac
cgggcttacaactgcaggcaggctgagtccacttacaccaggcaccctaggcgtccacag
aaacagatccagaaggcagacatacacttagttcctgtgttgagagggaggcaggaggag
ccagctgggggagatccaggcagacctccttcagctgggtcaacattgacattggatgcc
ctggaagcctttcctccttgtcagttcaacctgtctccatccctcagcaggactcttagg
aaccaaactttcccagaaaacaatagcactctccccctatcaccgccgaaaactctccgc
aaacttcacaacattgaggagagtgggactcttcctcgtaccccggctaacccccacagg
actctcaaaaagcccaagaatatggagttacaccaaacagagggccccgcagctcagctg
caggcatctctgcctcatacagggacactgaagctgccaggaaaggctgcagtccagcac
agtgcacaggaagaaccagactcagcccctgcctctcccccgtttcggactctcaggagg
cagaggaacgcagactccaagttgaggacagagaaagatgaccaccagcagatcttaagg
aatctggtccggatctccatggctgccttagcagagtacaaccccattgaactcactgca
gcgtccacagaggtacagcaagtctcccagctgctctccttactacaccggggccagttc
cagccaaaacccaacttccgggggaataagtactcagccagagctggcaggtctggtgca
caggatgctgactggcagagtaccaaggacagtggtcatggtgagagtgaggctggagat
atggactgggaaactgggcgggactctcccattgacccccttctggttgaagagctagat
aatctgctgactcagacagatgatgtgtttatggacctccctgatccagcctggatggct
cgcctgtctttgccccttaccacagactacagggagaatgtctttgtcccagatggaccc
ccttccccagagacccccgctcttcccccagctgctgacggagctgcctccttctccacc
tttgggaaggcccctggcgagagttcgcagatctccgggcacctcatctccgaggtcagc
accctctttgagatgctgctcactcagaagggagactctcatcccaggacttctgctgaa
gtgctgtacagactctctgctgcctaccgccgctctctgggtttggaaggggcagcaaca
gggggtggcaacgttcctagaggctcacccaaaacacaagataaagctgacccttcaaga
gatttagagatccatcaattagtttga
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integrated database retrieval system
